View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_high_14 (Length: 313)
Name: NF0848_high_14
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 2654056 - 2653776
Alignment:
| Q |
30 |
atagcaaacattgcaacaaacatactaatgactaagagttaatgagagaaactgcatcttttccctaatttaattgagctcagcaaaatctcatttccgc |
129 |
Q |
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| T |
2654056 |
atagcaaacattgcaacgtacatactaatgactaagagttaatgagagaaactgcatctttttcctaatttaattgagctcagcaaaatctcatttccgc |
2653957 |
T |
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| Q |
130 |
tgatttataa-aagaaagatataataaaaacaaattaaggaccctttgtacaagctttttctgtcttccacaatgaggaattcaagtccaaaagttggaa |
228 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2653956 |
agatttataataagaaagatacaataaaaacaaattaaggaccctttgtacaagatttttttgtcttccacaatgaggaattcaagtccaaaagttggaa |
2653857 |
T |
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| Q |
229 |
acttcagtatgtttattatatatttggtcactttccttgcggaatctgtaaatttttaagacataaagctgtgtttgaaatctgc |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2653856 |
acttcagtatgtttat----tatttggtcactttccttgcggaatctgtaaatttttaagacataaaacggtgtttgaaatctgc |
2653776 |
T |
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