View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_high_18 (Length: 222)
Name: NF0848_high_18
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4235872 - 4236085
Alignment:
| Q |
1 |
caaattcacccataataatagaactgctttaaacgtaacttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaat |
100 |
Q |
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||||||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235872 |
caaattcacccataataattgaactgctgttaacggaacttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaat |
4235971 |
T |
|
| Q |
101 |
tgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactatagatgcaaaattgtcatctaatataacaatatctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4235972 |
tgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttacaatagatgcaaaattgtcatctaatataacaatatctg |
4236071 |
T |
|
| Q |
201 |
aactctcctttgct |
214 |
Q |
| |
|
||||||| |||||| |
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| T |
4236072 |
aactctcttttgct |
4236085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6184996 - 6185208
Alignment:
| Q |
1 |
caaattcacccataataatagaactgctttaaacgtaacttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| | || | ||||| || |||||||||||||| || ||||| |||||||| ||||||||||||||||||| | |
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| T |
6184996 |
caaattcacccataataattgaactgctgttaatggtacttcaccggctgaaaccgccgcaacgaaattgataacaagggctgccacattcactgttagt |
6185095 |
T |
|
| Q |
101 |
tgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactatagatgcaaaattgtcatctaatataacaatatctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6185096 |
tgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaacactgttacgatagatgcaaaattgtcatctaatataacaatatctg |
6185195 |
T |
|
| Q |
201 |
aactctcctttgc |
213 |
Q |
| |
|
||||||| ||||| |
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| T |
6185196 |
aactctcttttgc |
6185208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 19592829 - 19592967
Alignment:
| Q |
66 |
aatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactat |
165 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
|
| Q |
166 |
agatgcaaaattgtcatctaatataacaatatctgaactctcctttgc |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctcttttgc |
19592967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 38356883 - 38356962
Alignment:
| Q |
68 |
tttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccca |
147 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||| ||||| ||||| || |||||||||||||||||||||||||| |
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| T |
38356883 |
tttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatcttcccca |
38356962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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