View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_high_7 (Length: 446)
Name: NF0848_high_7
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 7164748 - 7164986
Alignment:
| Q |
30 |
atttgtgcaaaaccgtgttattttcgaccataaaattagtttgtctaacatgtgtaatatttctaaaggtatattttcatgatatatataccagtgatag |
129 |
Q |
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| T |
7164748 |
atttgtggaaaaacgtgttattttcgaccataaaattagtttgtctaacat---------ttctaaaggtatattttcataatat----accagtgatag |
7164834 |
T |
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| Q |
130 |
gagaaagggcagtgattaggctaggtggcatggtaggaataagaaaaggaccaacaacaagaggtgggatgattgtgatgaaatccattttgtgctcttt |
229 |
Q |
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| T |
7164835 |
gagaaagggcagtgattaggctaggtggcatggtaggaataagaaaaggaccaacaacaagaggtgggatgattgtgatgaaatccatgttgtgctcttt |
7164934 |
T |
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| Q |
230 |
ggcaaatttccatgcttcttgctccgcaagtgtcttagaaacaaaatacatc |
281 |
Q |
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| T |
7164935 |
ggcaaatttccatgcttcttgctccgcaagtgtctttgaaacaaaatacatc |
7164986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 7165057 - 7165140
Alignment:
| Q |
353 |
atgtatttatgaaaataaatttctaacccagccagtcatcttaactctcctacaaaactcaacatcactccaacagctttcatc |
436 |
Q |
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| T |
7165057 |
atgtatttatgaaaataaatttctaacccagccagtcatcttcactctcctacaaaactcaacatcactccaacagctttcatc |
7165140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 281
Target Start/End: Original strand, 7157649 - 7157807
Alignment:
| Q |
123 |
gtgataggagaaagggcagtgattaggctaggtggcatggtaggaataagaaaaggaccaacaacaagaggtgggatgattgtgatgaaatccattttgt |
222 |
Q |
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| T |
7157649 |
gtgataagggaaagagcagtgattagactcggtggcattgaaggcataataaatggaccaacaacaagaggtggaataatggaaacaaagtctatgttgt |
7157748 |
T |
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| Q |
223 |
gctctttggcaaatttccatgcttcttgctccgcaagtgtcttagaaacaaaatacatc |
281 |
Q |
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| T |
7157749 |
gttctttggaaaacttccatgcttcttgttctgccagggtttttgaaacaaaatacatc |
7157807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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