View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_10 (Length: 450)
Name: NF0848_low_10
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Original strand, 27206954 - 27207366
Alignment:
| Q |
30 |
taatcgaaggccattttacaaatccttctctaaaacccgctcctttcaagatagtttagaattgatgatgcaaacattaagaaagaatttctttgatgat |
129 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27206954 |
taatcgaaggccattttgcaaatccttctctaaaacccgctcctttcaagatagtttagaattgatgatgcaaacattaagaaagactttctttgatgat |
27207053 |
T |
|
| Q |
130 |
ttccaaactgattacactttatatctttgctaggagaagttcaaatgtattctatataataaataaaattttaatttcaagttgaatttctttctataaa |
229 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27207054 |
ttccaaactgattagactttatatttttgctaggagaagttcaaatgtattctatataatgaataaaattttaatttcaagttgaatttctttctataaa |
27207153 |
T |
|
| Q |
230 |
ttaattagtttactttcatgtaacaaatattctcattactttgtaagtaaaaatattcattgtgatttagttactattctgcagaaagnnnnnnnntaaa |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
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| T |
27207154 |
ttaattagtttactttcatgtaacaaatattctcattactttgtaagtaaaaatattcattttgatttagttactattctgcagaa--ttttttttttaa |
27207251 |
T |
|
| Q |
330 |
agatatgctcgcttaagtaataaattattttaacaaactgagtaatagtaagatctatacaaacacatgttaacattgcccatcattttttcatgtcata |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27207252 |
agatatgctcgcttaagtaataaattattttaacaaactgagtaatagtaagatctatacaaacacatgttaacattggtcatcattttttcatgtcata |
27207351 |
T |
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| Q |
430 |
agggatattattcga |
444 |
Q |
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| T |
27207352 |
agggatattcttcga |
27207366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 31093431 - 31093247
Alignment:
| Q |
51 |
atccttctctaaaacccgctcctttcaagatagtttagaattgatgatgcaaacattaagaaagaatttctttgatgatttccaaac-tgattacacttt |
149 |
Q |
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| T |
31093431 |
atccttctctaaaacctgctcctttcaagatagcttagaatcgatgatgtaaacattaagaacgactttctttgatgaattccaagcatgattacacttt |
31093332 |
T |
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| Q |
150 |
atatctttgctaggagaagttcaaatgtattctatataataaataaaattttaatttcaagttgaatttctttctataaattaatta |
236 |
Q |
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| T |
31093331 |
atatctctgatggga-aagtttaaatgtattcaatatagtgaataaaa-tttaattttaaggtgaattactatctataaattaatta |
31093247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 31252934 - 31253083
Alignment:
| Q |
30 |
taatcgaaggccattttacaaatccttctctaaaacccgctcctttcaagatagtttagaattgatgatgcaaacattaagaaagaatttctttgatgat |
129 |
Q |
| |
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|||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| |||| |
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| T |
31252934 |
taatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgtaaatattaagaaagactttctttcatgaa |
31253033 |
T |
|
| Q |
130 |
ttccaaac-tgattacactttatatctttgctaggagaagttcaaatgta |
178 |
Q |
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|||||| | |||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
31253034 |
ttccaatcatgattacactttatatctctgctatgagaagtttaaatgta |
31253083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 13002652 - 13002503
Alignment:
| Q |
30 |
taatcgaaggccattttacaaatccttctctaaaacccgctcctttcaagatagtttagaattgatgatgcaaacattaagaaagaatttctttgatgat |
129 |
Q |
| |
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|||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||| |||| |
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| T |
13002652 |
taatcgaaggcccttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattgatgatgtaaatattaagaaagactttctttaatgaa |
13002553 |
T |
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| Q |
130 |
ttccaaac-tgattacactttatatctttgctaggagaagttcaaatgta |
178 |
Q |
| |
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|| ||| | |||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
13002552 |
ttacaatcatgattacactttatatctctgctatgagaagtttaaatgta |
13002503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 16163639 - 16163781
Alignment:
| Q |
43 |
ttttacaaatccttctctaaaacccgctcctttcaagatagtttagaattgatgatgcaaacattaagaaagaatttctttgatgatttccaaac-tgat |
141 |
Q |
| |
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|||| ||||||| || |||||||| ||| ||||||||||||| ||||||||||||||| |||| |||||||| ||| || ||||| ||| || | |||| |
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| T |
16163639 |
ttttgcaaatccatccctaaaacctgctgctttcaagatagtctagaattgatgatgc--acatcaagaaagactttgttcgatgaattctaagcatgat |
16163736 |
T |
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| Q |
142 |
tacactttatatctttgc-taggagaagttcaaatgtattctata |
185 |
Q |
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| T |
16163737 |
tggactttatatctctacataggagaagtttgaatgtattctata |
16163781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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