View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_12 (Length: 426)
Name: NF0848_low_12
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 29 - 414
Target Start/End: Original strand, 5375209 - 5375594
Alignment:
| Q |
29 |
aaaaccttcatctgattcattgcttccagttgtttatgcaggaaatgttagtgaatcctcagttgggtatctttgtatacctgattctttaacaagttca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375209 |
aaaaccttcatctgattcattgcttccagttgtttatgcaggaaatgttagtgaatcctcagttgggtatctttgtatacctgattctttaacaagttca |
5375308 |
T |
|
| Q |
129 |
aaagttttaggtaaaattgtgatatgtgaaagaggtggaaactcaagagttgaaaagggtcttgttgtaaaaaatgctggtggagttggaatgattttgg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375309 |
aaagttttaggtaaaattgtgatatgtgaaagaggtggaaactcaagagttgaaaagggtcttgttgtaaaaaatgctggtggagttggaatgattttgg |
5375408 |
T |
|
| Q |
229 |
taaacaatgaagcatatggtgaagagttaattgctgattctcatcttctaccagcagcagcattgggtcaaaaatcaagcactgttttaaaagactacgt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375409 |
taaacaatgaagcatatggtgaagagttaattgctgattctcatcttctaccagcagcagcattgggtcaaaaatcaagcactgttttaaaagactacgt |
5375508 |
T |
|
| Q |
329 |
ttttactacgaaaaatccaagagctaaacttgtttttgggggcacacacttacaagttcaaccttcaccagtggtagcagcattca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375509 |
ttttactacgaaaaatccaagagctaaacttgtttttgggggcacacacttacaagttcaaccttcaccagtggtagcagcattca |
5375594 |
T |
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