View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0848_low_13 (Length: 368)
Name: NF0848_low_13
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 1937858 - 1938190
Alignment:
| Q |
30 |
aaacacaatttccttaggtctttcaccaaatcattaattgtcatgctatactcgtctttcatttgcattttaagtgtaacattttataattcattcaatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1937858 |
aaacacaatttccttaggtctttcaccaaatcattaattgtcatgctatactcgtctttcatttgcattttaagtgtaacattttataattcattcaatg |
1937957 |
T |
|
| Q |
130 |
caatactaataattgtttagataaggaaatgtgcaatctctttaaaattattaaattaattgtttgtaacataagaactctataattgcatgcattttat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1937958 |
caatactaataattgtttagataaggaaatgtgcaatctctttaaaattattaaattaattgtttgtaacataagaactctataattgcatgcattttat |
1938057 |
T |
|
| Q |
230 |
acctcagcaataattgtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaaggtttgtaaccaagtttagtattt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1938058 |
acctcagcaataattgtgatatgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaaggtttgtaaccaagtttagtattt |
1938157 |
T |
|
| Q |
330 |
tgtgcacaatattatcattttgcttcatctcac |
362 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
1938158 |
tgtgcacaatattatcattttgcttcttctcac |
1938190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1105 times since January 2019
Visitors: 6137