View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_19 (Length: 315)
Name: NF0848_low_19
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 1938610 - 1938736
Alignment:
| Q |
184 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatacttacaagcattgtcgtgatttagaagtattatct |
283 |
Q |
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| T |
1938610 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatacttacaagcattgtcgtgatttagaagtattatct |
1938709 |
T |
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| Q |
284 |
ttatgtaaaagcttgatattgttggag |
310 |
Q |
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| T |
1938710 |
ttatgtaaaagcttgatgttcttggag |
1938736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 1938440 - 1938527
Alignment:
| Q |
14 |
atataaagagatgtattaatagcagacaataattcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac |
101 |
Q |
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| T |
1938440 |
atataaagagatgtattaatagcagacaataattcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac |
1938527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 23752221 - 23752286
Alignment:
| Q |
184 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatac |
249 |
Q |
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| T |
23752221 |
ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccagtccaacatac |
23752286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 23752082 - 23752138
Alignment:
| Q |
45 |
attcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac |
101 |
Q |
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| T |
23752082 |
attcaagacacaaagtttagggtttaaaataccaactatgtacaaatatgtaacaac |
23752138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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