View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0848_low_22 (Length: 268)

Name: NF0848_low_22
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0848_low_22
NF0848_low_22
[»] chr5 (19 HSPs)
chr5 (128-227)||(42552692-42552793)
chr5 (31-99)||(2477629-2477697)
chr5 (31-92)||(11361135-11361196)
chr5 (31-95)||(14138665-14138729)
chr5 (31-94)||(4892200-4892263)
chr5 (31-94)||(8145373-8145436)
chr5 (31-97)||(33584333-33584399)
chr5 (31-92)||(25398238-25398299)
chr5 (31-95)||(6043515-6043579)
chr5 (31-93)||(3362777-3362839)
chr5 (31-100)||(3522010-3522080)
chr5 (31-92)||(37321797-37321859)
chr5 (31-93)||(38899730-38899792)
chr5 (31-92)||(12850801-12850862)
chr5 (31-92)||(22913058-22913119)
chr5 (31-98)||(4434011-4434078)
chr5 (55-93)||(13664641-13664679)
chr5 (35-80)||(10458409-10458454)
chr5 (31-92)||(17545689-17545750)
[»] chr6 (17 HSPs)
chr6 (31-97)||(6127270-6127336)
chr6 (31-94)||(23291088-23291151)
chr6 (31-93)||(33695331-33695393)
chr6 (31-93)||(33696695-33696757)
chr6 (31-92)||(17705469-17705530)
chr6 (31-94)||(18365577-18365640)
chr6 (31-94)||(18370841-18370904)
chr6 (41-94)||(28675146-28675199)
chr6 (31-93)||(18889701-18889762)
chr6 (31-92)||(6031745-6031806)
chr6 (31-92)||(17176025-17176086)
chr6 (35-92)||(25986930-25986987)
chr6 (31-95)||(2309427-2309491)
chr6 (31-83)||(8515729-8515781)
chr6 (31-80)||(29693655-29693704)
chr6 (31-83)||(11548592-11548644)
chr6 (31-81)||(32702216-32702266)
[»] chr3 (26 HSPs)
chr3 (31-95)||(3574531-3574595)
chr3 (31-94)||(2754715-2754778)
chr3 (31-94)||(11347266-11347329)
chr3 (31-92)||(19650904-19650965)
chr3 (31-92)||(37217057-37217118)
chr3 (31-94)||(37522051-37522114)
chr3 (42-92)||(8320599-8320649)
chr3 (31-93)||(22426348-22426410)
chr3 (31-92)||(3456064-3456125)
chr3 (31-92)||(48160905-48160966)
chr3 (41-93)||(42297352-42297404)
chr3 (31-92)||(6041884-6041945)
chr3 (31-96)||(33113789-33113854)
chr3 (31-91)||(9797033-9797093)
chr3 (41-81)||(42921154-42921194)
chr3 (35-94)||(3137422-3137481)
chr3 (31-93)||(26612784-26612846)
chr3 (31-92)||(30385011-30385072)
chr3 (31-92)||(33145713-33145773)
chr3 (42-94)||(34482925-34482977)
chr3 (31-94)||(33839529-33839592)
chr3 (31-93)||(36865031-36865093)
chr3 (27-83)||(41224242-41224298)
chr3 (54-96)||(24343543-24343585)
chr3 (31-80)||(47738117-47738166)
chr3 (55-83)||(40327884-40327912)
[»] chr4 (22 HSPs)
chr4 (31-94)||(23964469-23964532)
chr4 (31-83)||(7745116-7745168)
chr4 (31-94)||(10442793-10442856)
chr4 (31-101)||(24128230-24128300)
chr4 (31-93)||(31078823-31078885)
chr4 (31-92)||(22199261-22199322)
chr4 (31-92)||(36072947-36073008)
chr4 (31-92)||(49387892-49387953)
chr4 (31-99)||(50156582-50156650)
chr4 (31-94)||(21802326-21802389)
chr4 (31-94)||(47290064-47290127)
chr4 (31-93)||(4751445-4751507)
chr4 (31-93)||(33530692-33530754)
chr4 (31-97)||(36073345-36073411)
chr4 (31-92)||(2624837-2624898)
chr4 (31-94)||(24392665-24392728)
chr4 (31-94)||(44893424-44893487)
chr4 (35-102)||(46441834-46441901)
chr4 (31-83)||(42671678-42671730)
chr4 (31-93)||(53123029-53123092)
chr4 (31-80)||(37219841-37219890)
chr4 (31-93)||(37934945-37935007)
[»] chr2 (15 HSPs)
chr2 (31-93)||(35160756-35160818)
chr2 (31-83)||(10661896-10661948)
chr2 (31-94)||(13354844-13354907)
chr2 (31-100)||(23268066-23268135)
chr2 (31-94)||(9293580-9293643)
chr2 (31-94)||(31174838-31174901)
chr2 (31-92)||(21936081-21936142)
chr2 (31-92)||(33380207-33380268)
chr2 (41-93)||(7475522-7475574)
chr2 (31-95)||(43330909-43330973)
chr2 (31-93)||(14941370-14941432)
chr2 (31-83)||(21393692-21393744)
chr2 (55-89)||(40262714-40262748)
chr2 (31-64)||(3989104-3989137)
chr2 (31-92)||(9723405-9723466)
[»] chr8 (27 HSPs)
chr8 (31-92)||(32393858-32393919)
chr8 (31-95)||(42755046-42755110)
chr8 (31-94)||(1645969-1646032)
chr8 (31-94)||(6108237-6108300)
chr8 (31-94)||(32064743-32064806)
chr8 (31-97)||(37986059-37986125)
chr8 (31-96)||(15187556-15187621)
chr8 (31-92)||(34665382-34665443)
chr8 (31-92)||(35353041-35353102)
chr8 (31-83)||(14128873-14128925)
chr8 (31-83)||(38016980-38017032)
chr8 (31-94)||(17841854-17841917)
chr8 (31-94)||(39772805-39772868)
chr8 (31-94)||(40780133-40780196)
chr8 (31-93)||(41819782-41819844)
chr8 (31-92)||(20091805-20091866)
chr8 (31-92)||(24211557-24211618)
chr8 (31-95)||(26042120-26042184)
chr8 (31-92)||(37132662-37132723)
chr8 (31-103)||(7017869-7017941)
chr8 (31-94)||(31347786-31347849)
chr8 (41-83)||(8453843-8453885)
chr8 (31-92)||(30835051-30835111)
chr8 (31-82)||(7021988-7022039)
chr8 (31-80)||(1886623-1886672)
chr8 (35-83)||(25581247-25581295)
chr8 (31-83)||(27782121-27782173)
[»] chr7 (19 HSPs)
chr7 (31-92)||(24394972-24395033)
chr7 (31-95)||(45637709-45637773)
chr7 (31-93)||(15577854-15577916)
chr7 (31-92)||(3961979-3962040)
chr7 (31-92)||(4974739-4974800)
chr7 (31-92)||(34482835-34482896)
chr7 (31-96)||(37477084-37477149)
chr7 (31-92)||(42611811-42611872)
chr7 (31-94)||(15329271-15329334)
chr7 (31-93)||(18036977-18037039)
chr7 (31-92)||(25167854-25167915)
chr7 (31-92)||(48880931-48880992)
chr7 (31-83)||(36790470-36790522)
chr7 (31-93)||(35444557-35444619)
chr7 (31-83)||(29737148-29737200)
chr7 (31-95)||(42696080-42696144)
chr7 (41-92)||(20010111-20010162)
chr7 (31-92)||(15238382-15238443)
chr7 (31-64)||(30848597-30848630)
[»] scaffold0204 (1 HSPs)
scaffold0204 (31-94)||(4394-4457)
[»] chr1 (17 HSPs)
chr1 (31-94)||(18404440-18404503)
chr1 (31-94)||(25463674-25463737)
chr1 (31-92)||(40214988-40215049)
chr1 (31-83)||(3559626-3559678)
chr1 (31-83)||(16045802-16045854)
chr1 (31-97)||(19015399-19015465)
chr1 (41-95)||(25973411-25973465)
chr1 (31-93)||(41876446-41876508)
chr1 (31-92)||(9910297-9910358)
chr1 (31-92)||(44094698-44094759)
chr1 (31-92)||(36966712-36966773)
chr1 (31-92)||(37821838-37821899)
chr1 (31-92)||(6883487-6883548)
chr1 (31-92)||(32000271-32000332)
chr1 (41-94)||(40273700-40273753)
chr1 (55-92)||(52329319-52329356)
chr1 (31-83)||(27523259-27523311)
[»] scaffold0471 (1 HSPs)
scaffold0471 (31-101)||(12833-12903)
[»] scaffold0665 (1 HSPs)
scaffold0665 (31-83)||(3077-3129)
[»] scaffold0096 (1 HSPs)
scaffold0096 (31-94)||(41009-41072)
[»] scaffold0228 (3 HSPs)
scaffold0228 (31-81)||(8413-8463)
scaffold0228 (31-81)||(15995-16045)
scaffold0228 (31-81)||(25947-25997)
[»] scaffold0178 (1 HSPs)
scaffold0178 (31-92)||(11621-11682)
[»] scaffold0085 (1 HSPs)
scaffold0085 (31-92)||(47850-47911)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 42552692 - 42552793
Alignment:
Q  128 atacatttatttttcttatagacttctc--aaacaattgtgacactaagtgaatgttgatttcaacaaaattaaggtgaaaaataacgacaaacgcaaaa 225  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42552692 atacatttatttttcttatagacttctctcaaacaattgtgatactaagtgaatgttgatttcaacaaaattgaggtgaaaaataacgacaaacgcaaaa 42552791  T
Q  226 ac 227  Q
    ||    
T  42552792 ac 42552793  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 2477697 - 2477629
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaattt 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  2477697 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctttattt 2477629  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 11361135 - 11361196
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  11361135 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 11361196  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 14138729 - 14138665
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  14138729 attctgccatgtaattcttgaaattttcttgataaaatctttcttgatatataacattgctctta 14138665  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 4892263 - 4892200
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  4892263 attctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctt 4892200  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 8145436 - 8145373
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  8145436 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatataacattcctctt 8145373  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 33584333 - 33584399
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaat 97  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||    
T  33584333 attctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctcataat 33584399  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 25398299 - 25398238
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  25398299 attctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 25398238  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 6043515 - 6043579
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  6043515 attcttccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 6043579  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 3362839 - 3362777
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||  ||||||||    
T  3362839 attctgccatgtcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 3362777  T

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Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 3522010 - 3522080
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc-ttaattta 100  Q
    ||||||||| |||||| || |||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  3522010 attctgccatgtcatttttgaaattttcttgaaaaaatctttcttgatatataacattgctcattaattta 3522080  T

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Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 37321797 - 37321859
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttctt-gatatataatattgctc 92  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  37321797 attctgccatgtcattcttaaaattttcttgataaaatctttcttagatatatagcattgctc 37321859  T

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Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 38899730 - 38899792
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||  ||||||||    
T  38899730 attctgccatgtcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 38899792  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 12850862 - 12850801
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||| ||  ||||||||||||||||||||||||||||||||  |||||||    
T  12850862 attctgccatgtcatttttggaattttcttgataaaatctttcttgatatatagcattgctc 12850801  T

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Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 22913058 - 22913119
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| || ||||||||| ||||||||||||||||||||  |||||||    
T  22913058 attctgccatgtcattcttgaatttttcttgaaaaaatctttcttgatatatagcattgctc 22913119  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 4434011 - 4434078
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaatt 98  Q
    |||||||||  |||||||| |||||||||| | ||||||||||||||||||||  ||||||| |||||    
T  4434011 attctgccatatcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataatt 4434078  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 13664679 - 13664641
Alignment:
Q  55 tttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  13664679 tttcttgataaaatctttcttaatatataacattgctct 13664641  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 10458454 - 10458409
Alignment:
Q  35 tgccaggtcattcttaaaattttcttgataaaatctttcttgatat 80  Q
    ||||| ||||||||| || ||||||||||||||| |||||||||||    
T  10458454 tgccatgtcattcttgaatttttcttgataaaatttttcttgatat 10458409  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 17545689 - 17545750
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| || ||||||||| ||| | ||||||||||||||  |||||||    
T  17545689 attctgccatgtcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 17545750  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 6127336 - 6127270
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaat 97  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  6127336 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctcttaat 6127270  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 23291088 - 23291151
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  23291088 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 23291151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 33695331 - 33695393
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  33695331 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 33696757 - 33696695
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  33696757 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 17705469 - 17705530
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  17705469 attctgtcatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 17705530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 18365577 - 18365640
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||  |||||||||    
T  18365577 attctgccatgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 18365640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 18370841 - 18370904
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||  |||||||||    
T  18370841 attctgccatgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 18370904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 28675199 - 28675146
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  28675199 gtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 28675146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 18889701 - 18889762
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||  ||||||||    
T  18889701 attctgccatgtcattcttgaaattttcttgat-aaatctttcttgatatatagcattgctct 18889762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 6031745 - 6031806
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||||||||||| ||||| |||||||||||||||||||  |||||||    
T  6031745 attctgtcatgtcattcttaaaattttattgatgaaatctttcttgatatatagcattgctc 6031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 17176025 - 17176086
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||| ||||||| |||||||||||||||||||||||||  |||||||    
T  17176025 attctgtcatgtcattcttgaaattttattgataaaatctttcttgatatatagcattgctc 17176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 25986987 - 25986930
Alignment:
Q  35 tgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||||||||  |||||||    
T  25986987 tgccatgtcattcttgaaattttcttaataaaatctttcttgatatatagcattgctc 25986930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 2309427 - 2309491
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| | |||||||||||   | |||||||||||||||||||||||||| ||||||||||    
T  2309427 attctgccatgccattcttaaaaaaattttgataaaatctttcttgatatataacattgctctta 2309491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 8515729 - 8515781
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||||||||    
T  8515729 attctgccatgtcattcttaaatctgtcttgataaaatctttcttgatatata 8515781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 29693655 - 29693704
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatat 80  Q
    ||||||||| ||||||||||||  ||||||||||||||| ||||||||||    
T  29693655 attctgccatgtcattcttaaatctttcttgataaaatcattcttgatat 29693704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11548592 - 11548644
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||    
T  11548592 attctgccatgtcattcttgaatttttcttgagaaaatttttcttgatatata 11548644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 32702266 - 32702216
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatata 81  Q
    |||||||||  |||||||| |||||||| ||| ||||||||||||||||||    
T  32702266 attctgccatatcattcttgaaattttcatgaaaaaatctttcttgatata 32702216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 3574531 - 3574595
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3574531 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctta 3574595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 2754778 - 2754715
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2754778 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 2754715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 11347329 - 11347266
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  11347329 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 11347266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 19650904 - 19650965
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  19650904 attctgccatgtcattcttaaaattttcttgataaaatctttcttaatatataacattgctc 19650965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 37217057 - 37217118
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  37217057 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 37217118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 37522114 - 37522051
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    |||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  37522114 attctgtcatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagtattgctctt 37522051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 8320599 - 8320649
Alignment:
Q  42 tcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8320599 tcattcttaaaattttcttgataaaatctttcttgatatataacattgctc 8320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 22426348 - 22426410
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  22426348 attctgccatgtcatttttaaaattttcttgataaaatctttcttaatatataacattgctct 22426410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 3456125 - 3456064
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  3456125 attctgccatatcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 48160966 - 48160905
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  48160966 attctgccatatcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 48160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 42297404 - 42297352
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  42297404 gtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctct 42297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 6041945 - 6041884
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  6041945 attctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 6041884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 33113854 - 33113789
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaa 96  Q
    ||||||||| || |||||| |||||||||| ||||||||||||||||||||||  |||||||||||    
T  33113854 attctgccatgtaattcttgaaattttcttaataaaatctttcttgatatatagcattgctcttaa 33113789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9797033 - 9797093
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgct 91  Q
    ||||||||| ||||||||| || ||||||||| ||||||||||||||||||||| ||||||    
T  9797033 attctgccatgtcattcttgaatttttcttgagaaaatctttcttgatatataacattgct 9797093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 42921194 - 42921154
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatata 81  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42921194 gtcattcttaaaattttcttgataaaatctttcttgatata 42921154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 3137422 - 3137481
Alignment:
Q  35 tgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  3137422 tgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 3137481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 26612846 - 26612784
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| || |||| || ||||||||||| ||||||||||||||||||||    
T  26612846 attctgccatgtcattcttgaatttttttttataaaatcttttttgatatataatattgctct 26612784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 30385072 - 30385011
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||| |||  |||||||    
T  30385072 attctgccatgtcatttttgaaattttcttgataaaatctttcttgataaatagcattgctc 30385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 33145773 - 33145713
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||||||||  |||||||    
T  33145773 attctgccatgtcattcttaaaatttt-ttaataaaatctttcttgatatatagcattgctc 33145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 34482925 - 34482977
Alignment:
Q  42 tcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    |||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  34482925 tcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 34482977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 33839592 - 33839529
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    |||||| || || ||||||||| |||| ||||||||||||||||| |||||||| |||||||||    
T  33839592 attctgtcatgttattcttaaattttttttgataaaatctttcttaatatataacattgctctt 33839529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 36865031 - 36865093
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||| ||| |||||||||||||||||||| |||||||||| ||| |||||||  ||||||||    
T  36865031 attctaccatgtcattcttaaaattttcttaataaaatcttccttaatatatagcattgctct 36865093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 41224298 - 41224242
Alignment:
Q  27 gataattctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||| ||||||||| || ||||||||| |||||||||||| |||||||    
T  41224298 gataattctaccatgtcattcttgaatttttcttgagaaaatctttcttaatatata 41224242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 24343585 - 24343543
Alignment:
Q  54 ttttcttgataaaatctttcttgatatataatattgctcttaa 96  Q
    |||||||||||||||||||||| |||||||  |||||||||||    
T  24343585 ttttcttgataaaatctttcttaatatatagcattgctcttaa 24343543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 47738166 - 47738117
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatat 80  Q
    |||||||||  |||||||| ||  ||||||||||||||||||||||||||    
T  47738166 attctgccatatcattcttgaatatttcttgataaaatctttcttgatat 47738117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 40327912 - 40327884
Alignment:
Q  55 tttcttgataaaatctttcttgatatata 83  Q
    |||||||||||||||||||||||||||||    
T  40327912 tttcttgataaaatctttcttgatatata 40327884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 23964469 - 23964532
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  23964469 attctgccatgtcattcttaaaatttttttgataaaatctttcttgatatataacattgctctt 23964532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 7745116 - 7745168
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7745116 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatata 7745168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 10442793 - 10442856
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  10442793 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 10442856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 24128300 - 24128230
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaatttaa 101  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  24128300 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctttatttaa 24128230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 31078823 - 31078885
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  31078823 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 31078885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 22199322 - 22199261
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  22199322 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 22199261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 36073008 - 36072947
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  36073008 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 36072947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 49387892 - 49387953
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  49387892 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 49387953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 50156582 - 50156650
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaattt 99  Q
    ||||||||| |||||||||||||||||||||| |||||||||||| |||||||  ||||||||| ||||    
T  50156582 attctgccatgtcattcttaaaattttcttgaaaaaatctttcttaatatatagcattgctcttgattt 50156650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 21802326 - 21802389
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||  |||||||||    
T  21802326 attctgccatgtcattcttgaaattttcttgataaaatatttcttgatatatagcattgctctt 21802389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 47290127 - 47290064
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  47290127 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 47290064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 4751507 - 4751445
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||  ||||||||    
T  4751507 attctgccatgtcattcttggaattttcttgataaaatctttcttgatatatagcattgctct 4751445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 33530692 - 33530754
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||||||||  ||||||||    
T  33530692 attctgccatgtcattcttgaatttttcttgataaaatctttcttgatatatagcattgctct 33530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 36073411 - 36073345
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaat 97  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  36073411 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattcctcttaat 36073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 2624898 - 2624837
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  2624898 attctgccatttcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 2624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 24392728 - 24392665
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| || ||||||||| ||||||||||||||||||||  |||||||||    
T  24392728 attctgccatgtcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctctt 24392665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 44893487 - 44893424
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||||||||    
T  44893487 attctgccatgtcattcttgaaatttttttgaaaaaatctttcttgatatatagcattgctctt 44893424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 46441901 - 46441834
Alignment:
Q  35 tgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaatttaat 102  Q
    ||||| ||||||||| |||||||||| | ||||||||||||||||||||  ||||||| |||||||||    
T  46441901 tgccatgtcattcttgaaattttcttaaaaaaatctttcttgatatatagcattgctcataatttaat 46441834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 42671730 - 42671678
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| |||||||||||| |||| |||||||||||||| ||||||||||    
T  42671730 attctgccatgtcattcttaaattttttttgataaaatctttattgatatata 42671678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 53123092 - 53123029
Alignment:
Q  31 attctgccaggtcattcttaaaattttctt-gataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| |||||||||| || ||||||||||||||||||||  ||||||||    
T  53123092 attctgccatgtcattcttgaaattttctttgaaaaaatctttcttgatatatagcattgctct 53123029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 37219841 - 37219890
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatat 80  Q
    ||||||||| ||||||||||||  ||||||||||||||| ||||||||||    
T  37219841 attctgccatgtcattcttaaatctttcttgataaaatcattcttgatat 37219890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 37934945 - 37935007
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||| ||| ||||||||| | ||||| |||||||||||||| ||||||||||  ||||||||    
T  37934945 attctaccatgtcattcttgacatttttttgataaaatcttttttgatatatagcattgctct 37935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 35160818 - 35160756
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  35160818 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctct 35160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 10661948 - 10661896
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10661948 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatata 10661896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 13354907 - 13354844
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  13354907 attctgccatatcattcttgaaattttcttgataaaatctttcttgatatataacattgctctt 13354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 23268066 - 23268135
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaattta 100  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||||| ||||    
T  23268066 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcttatttta 23268135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 9293580 - 9293643
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||  |||||||||    
T  9293580 attctgccatgtcattcttgaaaatttcttgataaaatctttcttgatatatagcattgctctt 9293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 31174838 - 31174901
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||    
T  31174838 attctgccatgtcattcttgaaattttcttaataaaatctttcttgatatataacattgttctt 31174901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 21936142 - 21936081
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  21936142 attctgccatatcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 21936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 33380268 - 33380207
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  33380268 attcagccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 33380207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 7475522 - 7475574
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||||||||| ||||||||||||||||||||  ||||||||    
T  7475522 gtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctct 7475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 43330973 - 43330909
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| ||||||||| || |||| |||| ||||||||||||||||||||  ||||||||||    
T  43330973 attctgccatgtcattcttgaattttttttgagaaaatctttcttgatatatagcattgctctta 43330909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 14941370 - 14941432
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| ||  |||||| ||||||||||||||||||||||  ||||||||    
T  14941370 attctgccatgtcattcttgaatctttcttaataaaatctttcttgatatatagcattgctct 14941432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 21393692 - 21393744
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||    
T  21393692 attctaccatgtcattcttaaatttttcttgagaaaatttttcttgatatata 21393744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 40262714 - 40262748
Alignment:
Q  55 tttcttgataaaatctttcttgatatataatattg 89  Q
    |||||||||||||||||||||||||||||| ||||    
T  40262714 tttcttgataaaatctttcttgatatataacattg 40262748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 3989137 - 3989104
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgata 64  Q
    ||||||||| ||||||||||||||||||||||||    
T  3989137 attctgccatgtcattcttaaaattttcttgata 3989104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 9723466 - 9723405
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||||||  |||||| |||||||||||||| |||||||  |||||||    
T  9723466 attctgtcatgtcattcttaaatctttcttaataaaatctttcttaatatatagcattgctc 9723405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 32393919 - 32393858
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  32393919 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 32393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 42755046 - 42755110
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  42755046 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatatcattgctctta 42755110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 1645969 - 1646032
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1645969 attctgccatgtctttcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 1646032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 6108237 - 6108300
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  6108237 attctgccatgtcattcttaaaattttcttaaaaaaatctttcttgatatataacattgctctt 6108300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 32064806 - 32064743
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  32064806 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 32064743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 37986059 - 37986125
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaat 97  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||| ||||||||    
T  37986059 attctgccatgtcattcttaaaatttttttgataaaatctttcttgatatatagcattactcttaat 37986125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 15187621 - 15187556
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaa 96  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  15187621 attctgccatatcattcttgaaattttcttgataaaatctttcttgatatatagcattgctcttaa 15187556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 34665443 - 34665382
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  34665443 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 34665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 35353102 - 35353041
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  35353102 attctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctc 35353041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 14128925 - 14128873
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  14128925 attctgccatgtcattcttaaaattttattgataaaatctttcttgatatata 14128873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 38017032 - 38016980
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  38017032 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatata 38016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 17841854 - 17841917
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  17841854 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 17841917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 39772805 - 39772868
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||    
T  39772805 attctgccatgtcattcttgaaatttttttgataaaatatttcttgatatataacattgctctt 39772868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 40780133 - 40780196
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||||    
T  40780133 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctt 40780196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 41819782 - 41819844
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    |||||||||  ||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  41819782 attctgccatatcattcttaaaacattcttgataaaatctttcttgatatataacattgctct 41819844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 20091805 - 20091866
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||  |||||||    
T  20091805 attctgccatgtcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 20091866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 24211557 - 24211618
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  24211557 attctgccatgccattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 24211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 26042120 - 26042184
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    |||||| || ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||    
T  26042120 attctgtcatgtcattcttgaaattttcttgataaaatctttcttaatatatagcattgctctta 26042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 37132662 - 37132723
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||| ||||||||||||||| ||| ||||||||||  |||||||    
T  37132662 attctgccatgtcattcttaaatttttcttgataaaatattttttgatatatagcattgctc 37132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 7017869 - 7017941
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaatttaata 103  Q
    ||||||||| ||||||||| || ||||||| | |||||||||| |||||||||  |||||||||||| |||||    
T  7017869 attctgccatgtcattcttgaatttttcttaagaaaatctttcatgatatatagcattgctcttaatgtaata 7017941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 31347786 - 31347849
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||  |||||||||    
T  31347786 attctgccatgtcattcttgaatttttcttgagaaaatatttcttgatatatagcattgctctt 31347849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 8453885 - 8453843
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  8453885 gtcattcttgaaattttcttgaaaaaatctttcttgatatata 8453843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 30835051 - 30835111
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| || |||| | |||||||||||||||||||||||| |||||||    
T  30835051 attctgccatgtcattcttgaattttt-tcgataaaatctttcttgatatataacattgctc 30835111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 7022039 - 7021988
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatat 82  Q
    |||||||||  |||||||| || ||||||||| |||||||||||||||||||    
T  7022039 attctgccatatcattcttgaatttttcttgagaaaatctttcttgatatat 7021988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 1886623 - 1886672
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatat 80  Q
    ||||||||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  1886623 attctgccacgtcattcttgaatctttcttgataaaatcattcttgatat 1886672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 25581247 - 25581295
Alignment:
Q  35 tgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||| ||||||||| ||||||||||  ||||| |||||||||||||||    
T  25581247 tgccatgtcattcttgaaattttcttcgtaaaaactttcttgatatata 25581295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 27782121 - 27782173
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| |||||| || ||  |||||||||||||| ||||||||||||||    
T  27782121 attctgccatgtcattattgaatctttcttgataaaatatttcttgatatata 27782173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 24395033 - 24394972
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  24395033 attctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 24394972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 45637773 - 45637709
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  45637773 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctta 45637709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 15577854 - 15577916
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  15577854 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctct 15577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 3962040 - 3961979
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  3962040 attctgtcatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctc 3961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 4974739 - 4974800
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  4974739 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 4974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 34482896 - 34482835
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  34482896 attctgccatgtcattcttaaaattttcttaataaaatctttcttgatatatagcattgctc 34482835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 37477084 - 37477149
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaa 96  Q
    ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||  |||||||||||    
T  37477084 attctgccatgtcattcttaaatttttcttgagaaaatctttcttgatatatagcattgctcttaa 37477149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 42611872 - 42611811
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  42611872 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 42611811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 15329334 - 15329271
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  15329334 attctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctctt 15329271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 18037039 - 18036977
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||  ||||||||    
T  18037039 attctgccatgtcattcttaaatttttcttgaaaaaatctttcttgatatatatcattgctct 18036977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 25167854 - 25167915
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||  |||||||    
T  25167854 attctgccatgtcattcttaaaattttcttaaaaaaatctttcttgatatatagcattgctc 25167915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 48880931 - 48880992
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  48880931 attctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 48880992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 36790470 - 36790522
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  36790470 attctgccatgtcattcttaaatttttcttgataaaaactttcttgatatata 36790522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 35444619 - 35444557
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||| |||||||  ||||||||    
T  35444619 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttaatatatagcattgctct 35444557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 29737200 - 29737148
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||| ||| |||||||||||||||||||| | ||||||||||||||||||||    
T  29737200 attctaccatgtcattcttaaaattttcttaaaaaaatctttcttgatatata 29737148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 42696144 - 42696080
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||| | |||||||||||||  || || ||||||||||||||||||||||| ||||||||||    
T  42696144 attctgctatgtcattcttaaaaaatttttaataaaatctttcttgatatataacattgctctta 42696080  T

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Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 20010111 - 20010162
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||| |||||||||||||||||||||||||  |||||||    
T  20010111 gtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctc 20010162  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 15238443 - 15238382
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| || ||||||||| ||| | ||||||||||||||  |||||||    
T  15238443 attctgccatgtcattcttgaatttttcttgagaaattttttcttgatatatagcattgctc 15238382  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 30848630 - 30848597
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgata 64  Q
    ||||||||| ||||||||||||||||||||||||    
T  30848630 attctgccatgtcattcttaaaattttcttgata 30848597  T

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Target: scaffold0204 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 4457 - 4394
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  4457 attctgccatgtcattcttaaaattttcttgaaaaaatctttcttgatatatagcattgctctt 4394  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 18404503 - 18404440
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  18404503 attctaccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctt 18404440  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 25463737 - 25463674
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  25463737 attctgccatgtcattcttaaaattttcttcataaaatctttcttgatatatagcattgctctt 25463674  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 40215049 - 40214988
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  40215049 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 40214988  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 3559678 - 3559626
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  3559678 attctgccatgtcattcttaaaatttttttgataaaatctttcttgatatata 3559626  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 16045802 - 16045854
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  16045802 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatatata 16045854  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 19015465 - 19015399
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaat 97  Q
    |||||||||  |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||    
T  19015465 attctgccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctcttaat 19015399  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 25973465 - 25973411
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctta 95  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  25973465 gtcattcttgaaattttcatgataaaatctttcttgatatataacattgctctta 25973411  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 41876446 - 41876508
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctct 93  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  41876446 attctgccatgtcattcttaaaatttttttgaaaaaatctttcttgatatatagcattgctct 41876508  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 9910297 - 9910358
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  9910297 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 9910358  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 44094759 - 44094698
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||  |||||||    
T  44094759 attctgccatgtcattcttgaaattttcttgataaaatatttcttgatatatagcattgctc 44094698  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 36966712 - 36966773
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||  |||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  36966712 attctgccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 36966773  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 37821838 - 37821899
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||  |||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  37821838 attctgccatatcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctc 37821899  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 6883548 - 6883487
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| |||||||||| | |||||||||||| |||||||  |||||||    
T  6883548 attctgccatgtcattcttgaaattttcttaaaaaaatctttcttaatatatagcattgctc 6883487  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 32000271 - 32000332
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||| || ||||||||| ||||||||||||||||||||  |||||||    
T  32000271 attctgtcatgtcattcttgaatttttcttgagaaaatctttcttgatatatagcattgctc 32000332  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 40273753 - 40273700
Alignment:
Q  41 gtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| || ||||||||| ||||||||||||||||| ||  |||||||||    
T  40273753 gtcattcttgaatttttcttgaaaaaatctttcttgatatctagcattgctctt 40273700  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 52329356 - 52329319
Alignment:
Q  55 tttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  52329356 tttcttgataaattctttcttgatatataacattgctc 52329319  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 27523259 - 27523311
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    |||||| || |||||||||||| |||||||||||||||  |||||||| ||||    
T  27523259 attctgtcatgtcattcttaaatttttcttgataaaattgttcttgatgtata 27523311  T

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Target: scaffold0471 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 12903 - 12833
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctcttaatttaa 101  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  12903 attctgccatgtcattcttgaaattttcttgaaaaaatctttcttgatatatagcattgctctttatttaa 12833  T

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Target: scaffold0665 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 3129 - 3077
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatata 83  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  3129 attctgccatgtcattcttaaaattttattgataaaatctttcttgatatata 3077  T

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Target: scaffold0096 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 41072 - 41009
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctctt 94  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||  |||||||||    
T  41072 attctgccatgtcattcttgaaatttttttgataaaatctttcttgatatatagcattgctctt 41009  T

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Target: scaffold0228 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 8463 - 8413
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatata 81  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  8463 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatata 8413  T

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Target: scaffold0228; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 16045 - 15995
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatata 81  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16045 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatata 15995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 25997 - 25947
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatata 81  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  25997 attctgccatgtcattcttgaaattttcttgataaaatctttcttgatata 25947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 11682 - 11621
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  11682 attctgtcatgtcattcttgaaattttcttgataaaatctttcttgatatatagcattgctc 11621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 47911 - 47850
Alignment:
Q  31 attctgccaggtcattcttaaaattttcttgataaaatctttcttgatatataatattgctc 92  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||  |||||||    
T  47911 attctgccatgtcattcttgaaattttcttgataaaatctttcttgataaatagcattgctc 47850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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