View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0848_low_26 (Length: 251)

Name: NF0848_low_26
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0848_low_26
NF0848_low_26
[»] chr8 (2 HSPs)
chr8 (10-251)||(26797740-26797980)
chr8 (154-192)||(14955263-14955301)
[»] chr1 (3 HSPs)
chr1 (120-187)||(49899080-49899147)
chr1 (120-187)||(7845152-7845219)
chr1 (140-187)||(10483284-10483331)
[»] chr6 (1 HSPs)
chr6 (154-187)||(31535696-31535729)
[»] chr4 (3 HSPs)
chr4 (127-192)||(38868845-38868910)
chr4 (120-175)||(36363568-36363623)
chr4 (120-184)||(33095268-33095332)
[»] chr7 (1 HSPs)
chr7 (120-187)||(28299689-28299756)
[»] chr2 (2 HSPs)
chr2 (124-187)||(752199-752262)
chr2 (137-187)||(41311710-41311760)
[»] chr3 (1 HSPs)
chr3 (156-192)||(42983905-42983941)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 26797740 - 26797980
Alignment:
Q  10 aagaatataaagcaaaagtccctcctaaaaatagtagtagttctttattatatatgttgcaaaaccagaagattaaattgaaaaaatgaaggaaatgcta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  26797740 aagaatataaagcaaaagtccctcctaaaaatagtagtagttctttattatatatgttgcaaaaccagaagattaaattgaaaaaat-aaggaaatgtta 26797838  T
Q  110 acaagtgccctaaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagtagctttctatctatcctcagagc 209  Q
    ||||||||| ||||| ||||||||   |||||||||||| |||||||||||||||||||||| |||||||||||||||  ||    ||||||||||||||    
T  26797839 acaagtgccgtaaaatgtctaaagagaaaattttgttttggaactgatgcatttaacacattaaaagtttaaaaagtaattt----tctatcctcagagc 26797934  T
Q  210 attcgttagcaaaacctaaaaat----taaatatacgtagtttgca 251  Q
    ||| |||||||| ||||||||||    |||||||||||||||||||    
T  26797935 atttgttagcaagacctaaaaatgaaataaatatacgtagtttgca 26797980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 14955301 - 14955263
Alignment:
Q  154 tgatgcatttaacacattgaaagtttaaaaagtagcttt 192  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  14955301 tgatgcattcaacacattgaaagtttaaaaagtaacttt 14955263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 49899147 - 49899080
Alignment:
Q  120 taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta 187  Q
    |||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||| ||| |||||||    
T  49899147 taaaaagtctaaagcagaaactttgttttggaaatgatgcattcaacacattgaaattttgaaaagta 49899080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 7845152 - 7845219
Alignment:
Q  120 taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta 187  Q
    |||||||||||||| |||||||||||||| | |  ||||||||||||| ||| |||||||||||||||    
T  7845152 taaaaagtctaaagaagaaattttgttttagtaaggatgcatttaacatattaaaagtttaaaaagta 7845219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 10483284 - 10483331
Alignment:
Q  140 ttttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta 187  Q
    ||||||||| ||| |||||||||||| ||||||||||||| |||||||    
T  10483284 ttttgttttagaaatgatgcatttaatacattgaaagttttaaaagta 10483331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 31535696 - 31535729
Alignment:
Q  154 tgatgcatttaacacattgaaagtttaaaaagta 187  Q
    ||||||||||||||||||||||||||||||||||    
T  31535696 tgatgcatttaacacattgaaagtttaaaaagta 31535729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 38868845 - 38868910
Alignment:
Q  127 tctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagtagcttt 192  Q
    |||||||  |||||||||| || | | ||||||||| |||||||||||||||||||||||| ||||    
T  38868845 tctaaagaggaaattttgtcttgggaatgatgcattcaacacattgaaagtttaaaaagtaacttt 38868910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 36363568 - 36363623
Alignment:
Q  120 taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaa 175  Q
    |||||||| ||||| |||||||||||||| | | ||||||||| ||||||||||||    
T  36363568 taaaaagtttaaagaagaaattttgttttgggattgatgcattcaacacattgaaa 36363623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 33095332 - 33095268
Alignment:
Q  120 taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaa 184  Q
    |||||||| ||| | |||||||||||  | ||| |||||||||||||| |||||| |||||||||    
T  33095332 taaaaagtttaaggaagaaattttgtcatagaaatgatgcatttaacatattgaatgtttaaaaa 33095268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 28299689 - 28299756
Alignment:
Q  120 taaaaagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta 187  Q
    |||||||| ||||| | |||||||||||| ||| ||||||||||||   ||||||| |||||||||||    
T  28299689 taaaaagtttaaagaataaattttgttttagaaatgatgcatttaatgtattgaaattttaaaaagta 28299756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 752262 - 752199
Alignment:
Q  124 aagtctaaagcagaaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta 187  Q
    |||||||||| ||||||||||| || | | ||||||||| |||||||||||| || ||||||||    
T  752262 aagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaagta 752199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 41311710 - 41311760
Alignment:
Q  137 aaattttgttttcgaactgatgcatttaacacattgaaagtttaaaaagta 187  Q
    ||||||||||||  || | |||||||||||| |||||||||||||||||||    
T  41311710 aaattttgttttgaaaattatgcatttaacaaattgaaagtttaaaaagta 41311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 42983905 - 42983941
Alignment:
Q  156 atgcatttaacacattgaaagtttaaaaagtagcttt 192  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  42983905 atgcatttaacacattgaaaatttaaaaagtaacttt 42983941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 277 times since January 2019
Visitors: 6127