View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_3 (Length: 546)
Name: NF0848_low_3
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 30 - 536
Target Start/End: Original strand, 30256427 - 30256917
Alignment:
| Q |
30 |
agcatctttttgtgttaaattaactttggaatgaatgnnnnnnnnnctgtaataattttatgcacacttttctgagttgttctgtagtagctagtaagga |
129 |
Q |
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| T |
30256427 |
agcatctttttgtgttaaattaactttggaatgaatgaaaaaaaaactgtaataattttatgcacacttttctgagttgttctgtagtagctagtaagga |
30256526 |
T |
|
| Q |
130 |
ttttgaagagcagaaagcattcaactatgatgaagagaaagggaaaggaaagcaagaaaagagaagtcttatgagcaatgacatagaagaagatgactac |
229 |
Q |
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| T |
30256527 |
ttttgaagagcagaaagcattcaactatgatgaagagaaagggaaaggaaagcaagaaaagagaagtcttatgagcaatgacatagaagaagatgactac |
30256626 |
T |
|
| Q |
230 |
ctgtaacttttcttctctcaaatactctatcaacgattcaacgctatgaaactatttacattagaaatttagaatgcattttcttcttctcaactcttac |
329 |
Q |
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| T |
30256627 |
ctgtaacttttcttctctcaaatactctatcaacg--------ctatgaaactatgtacattag--------aatgcattttcttcttctcaactcttac |
30256710 |
T |
|
| Q |
330 |
ttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcaaccattatggcgcaaagtaccaatagcttcgagcctaatcaatc |
429 |
Q |
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| T |
30256711 |
ttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcagccattatggcgcaaagtaccaatagcttcgagcctaatcaatc |
30256810 |
T |
|
| Q |
430 |
catatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaactccggtgcacgacgcatttgccttatggataat |
529 |
Q |
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| T |
30256811 |
catatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaactccggtgcacgacgcatttgccttatggataat |
30256910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 480
Target Start/End: Original strand, 15170478 - 15170588
Alignment:
| Q |
370 |
tggctgagtcaaggcaaccattatggcgcaaagtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagt |
469 |
Q |
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||||||| |||| |||||||||||||||||||| |||||| | || ||| | || |||||||| || ||||| ||| ||||| | ||||| |||||| |
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| T |
15170478 |
tggctgaagcaagacaaccattatggcgcaaagttccaataccatcaagcttgataaatccataccgaatagtaattatcatgagacttgtaatcctagc |
15170577 |
T |
|
| Q |
470 |
tttcttcttcc |
480 |
Q |
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|||||||||| |
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| T |
15170578 |
attcttcttcc |
15170588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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