View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_35 (Length: 205)
Name: NF0848_low_35
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 28529659 - 28529534
Alignment:
| Q |
1 |
attctccagtcgatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaat--ttacaacnnnnnnnngtagcaggagagtactgg |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
28529659 |
attctccagtcaatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcaggagagtactgg |
28529560 |
T |
|
| Q |
99 |
cattttcatattgaaatattcttcga |
124 |
Q |
| |
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|||||||||||||||||||| ||||| |
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|
| T |
28529559 |
cattttcatattgaaatatttttcga |
28529534 |
T |
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