View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0848_low_4 (Length: 537)

Name: NF0848_low_4
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0848_low_4
NF0848_low_4
[»] chr7 (9 HSPs)
chr7 (82-307)||(22244852-22245077)
chr7 (312-442)||(22245648-22245778)
chr7 (97-307)||(23610051-23610260)
chr7 (325-389)||(15706623-15706685)
chr7 (97-179)||(22547007-22547089)
chr7 (332-426)||(17205939-17206030)
chr7 (326-426)||(13435462-13435556)
chr7 (365-428)||(25180617-25180680)
chr7 (381-444)||(13734678-13734742)
[»] chr6 (14 HSPs)
chr6 (325-442)||(25949920-25950037)
chr6 (330-442)||(25964514-25964632)
chr6 (330-442)||(25969161-25969279)
chr6 (330-442)||(25973601-25973719)
chr6 (325-389)||(17744102-17744166)
chr6 (325-389)||(4188807-4188870)
chr6 (325-389)||(19074705-19074768)
chr6 (365-442)||(17283443-17283520)
chr6 (395-443)||(26474548-26474596)
chr6 (329-443)||(14894027-14894139)
chr6 (329-403)||(19569539-19569611)
chr6 (325-379)||(23492974-23493027)
chr6 (325-362)||(18449443-18449480)
chr6 (373-441)||(26018556-26018624)
[»] chr2 (3 HSPs)
chr2 (325-432)||(23341173-23341279)
chr2 (325-389)||(20282776-20282840)
chr2 (329-400)||(32440778-32440847)
[»] chr3 (13 HSPs)
chr3 (325-426)||(17051347-17051447)
chr3 (325-389)||(3244438-3244502)
chr3 (325-403)||(47975443-47975522)
chr3 (325-387)||(3249569-3249631)
chr3 (325-388)||(1991480-1991543)
chr3 (329-442)||(2722554-2722668)
chr3 (325-389)||(10607640-10607703)
chr3 (325-389)||(16384814-16384878)
chr3 (325-379)||(26169643-26169696)
chr3 (325-362)||(10601328-10601365)
chr3 (378-442)||(16034694-16034759)
chr3 (329-432)||(36079674-36079772)
chr3 (329-403)||(42243920-42243993)
[»] scaffold0360 (1 HSPs)
scaffold0360 (325-405)||(5487-5567)
[»] scaffold0175 (1 HSPs)
scaffold0175 (325-389)||(11981-12045)
[»] chr5 (7 HSPs)
chr5 (325-406)||(20915363-20915444)
chr5 (325-389)||(25577011-25577074)
chr5 (325-389)||(34780974-34781037)
chr5 (386-432)||(20167624-20167670)
chr5 (325-362)||(20968407-20968444)
chr5 (395-432)||(23435933-23435970)
chr5 (395-432)||(23447300-23447337)
[»] chr4 (6 HSPs)
chr4 (325-389)||(11048920-11048984)
chr4 (329-442)||(11902001-11902112)
chr4 (325-389)||(40559949-40560012)
chr4 (329-403)||(10731824-10731896)
chr4 (329-403)||(10945593-10945665)
chr4 (386-443)||(8561753-8561810)
[»] chr1 (10 HSPs)
chr1 (325-389)||(17987221-17987285)
chr1 (325-389)||(18379595-18379659)
chr1 (325-388)||(41228946-41229008)
chr1 (329-426)||(21240681-21240778)
chr1 (329-389)||(23289364-23289423)
chr1 (381-443)||(39286041-39286104)
chr1 (333-432)||(41802881-41802973)
chr1 (325-389)||(44538852-44538914)
chr1 (325-389)||(20405365-20405428)
chr1 (329-400)||(20412893-20412962)
[»] scaffold0197 (1 HSPs)
scaffold0197 (329-432)||(8210-8306)
[»] chr8 (6 HSPs)
chr8 (329-442)||(15760179-15760290)
chr8 (325-389)||(33633100-33633163)
chr8 (329-426)||(25397567-25397662)
chr8 (325-379)||(23694436-23694488)
chr8 (325-406)||(14877701-14877779)
chr8 (329-389)||(18959829-18959887)
[»] scaffold0142 (1 HSPs)
scaffold0142 (325-389)||(24621-24684)
[»] scaffold0046 (1 HSPs)
scaffold0046 (325-389)||(21121-21184)
[»] scaffold0022 (1 HSPs)
scaffold0022 (325-389)||(53461-53524)
[»] scaffold0450 (1 HSPs)
scaffold0450 (325-389)||(79-142)
[»] scaffold0093 (1 HSPs)
scaffold0093 (325-389)||(27660-27723)
[»] scaffold0081 (1 HSPs)
scaffold0081 (329-389)||(51133-51192)
[»] scaffold0021 (1 HSPs)
scaffold0021 (325-389)||(13701-13764)
[»] scaffold0251 (1 HSPs)
scaffold0251 (325-362)||(18294-18331)
[»] scaffold0125 (1 HSPs)
scaffold0125 (325-362)||(43335-43372)
[»] scaffold0213 (1 HSPs)
scaffold0213 (329-362)||(15940-15973)
[»] scaffold0713 (1 HSPs)
scaffold0713 (373-441)||(6128-6196)
[»] scaffold0001 (1 HSPs)
scaffold0001 (325-389)||(182055-182118)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 82 - 307
Target Start/End: Original strand, 22244852 - 22245077
Alignment:
Q  82 cagagaaaatataacataaaatacagttagcaatccatctggtgtgcattccatgattcttatgagaaacagagaacataatcctcattacattctgttt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22244852 cagagaaaatataacataaaatacagttagcaatccatctggtgtgcattccatgattcttataagaaacagagaacataatcctcattacattctgttt 22244951  T
Q  182 aaaacataaacacccaagcaataaataagctattccaagaattgagcaatgaatctcaaaatgaaaatcaagggattcatttcatcatatttctcaacca 281  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22244952 acaacataaacacccaagcaataaataagctattccaagaattgagcaatgaatctcaaaatgaaaatcaagggattcatttcatcatatttctcaacca 22245051  T
Q  282 aaaatatgagacgcaatatatttaaa 307  Q
    ||||||||||||||||||||||||||    
T  22245052 aaaatatgagacgcaatatatttaaa 22245077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 312 - 442
Target Start/End: Original strand, 22245648 - 22245778
Alignment:
Q  312 gcaaatgctactattttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgc 411  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22245648 gcaaatgctactattttaataatgattagatgaaagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgc 22245747  T
Q  412 tttgggattattggtccgtcaaagtgacaaa 442  Q
    |||||||||||||||||||||||||||||||    
T  22245748 tttgggattattggtccgtcaaagtgacaaa 22245778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 97 - 307
Target Start/End: Original strand, 23610051 - 23610260
Alignment:
Q  97 ataaaatacagttagcaatccatctggtgtgcattccatgattcttatgagaaacagagaacataatcctcattacattctgtttaaaacataaacaccc 196  Q
    |||||| ||||||| |||||||| |  ||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||| ||||||||||| |    
T  23610051 ataaaacacagttaacaatccatttattgtgcattccatgattcttattaggaacagagaacataagcctcattagattctgtttacaacataaacactc 23610150  T
Q  197 aagcaataaataagctattccaagaattgagcaatgaatctcaaaatgaaaatcaagggattcatttcatcatatttctcaaccaaaaatatgagacgca 296  Q
    |||| |||||||| ||| | |||| |||||| ||  | |||||||||||||| |||| |||| |||| ||||||||||||||| || |||||||||  ||    
T  23610151 aagctataaataaactactacaagtattgagtaagaattctcaaaatgaaaaccaagtgatt-attttatcatatttctcaactaagaatatgagataca 23610249  T
Q  297 atatatttaaa 307  Q
    ||||| |||||    
T  23610250 atatacttaaa 23610260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 15706623 - 15706685
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| |||||||||||||  |||| ||| |||||||||| |||||||||    
T  15706623 ttttaataatgattagatgaaagtttcaaaggtt--aaaagttggatttttaattaaaagaaaat 15706685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 22547089 - 22547007
Alignment:
Q  97 ataaaatacagttagcaatccatctggtgtgcattccatgattcttatgagaaacagagaacataatcctcattacattctgt 179  Q
    |||||| ||||||| |||||||| |||||||||||||||  | || ||||| |||||||| |||||  ||||||| |||||||    
T  22547089 ataaaacacagttaacaatccatatggtgtgcattccatagtactaatgaggaacagagagcataaggctcattagattctgt 22547007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 17205939 - 17206030
Alignment:
Q  332 aatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggt 426  Q
    |||| |||||||||||||| |   |||||||| |||| ||||||| |||||  ||||| |||||| |||||||| ||||  ||||||||||||||    
T  17205939 aatggttagatgagagtttaa---gttaaaaagtttggatttttatttgaattaaaataacaatagtaataaaaaggtgtcttgggattattggt 17206030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 426
Target Start/End: Complemental strand, 13435556 - 13435462
Alignment:
Q  326 tttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattgg 425  Q
    |||||||||||||||||||||||||   || ||| ||| |||| | |||||||| |||||||||   ||||||||||||| || || |||||||||||||    
T  13435556 tttaataatgattagatgagagttt--gagattataaagtttggaattttaattaaaagaaaat---aataataataaaa-ggagccttgggattattgg 13435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Original strand, 25180617 - 25180680
Alignment:
Q  365 tttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 428  Q
    |||||||||||||  ||| |||||| ||||||||||||||| ||||  ||||||| ||||||||    
T  25180617 tttgaatttttaacagaatgaaaataacaataataataaaaaggtgtcttgggatcattggtcc 25180680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 13734742 - 13734678
Alignment:
Q  381 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaatg 444  Q
    ||||||||| |||||||||||||||| ||||  || |||| ||||||||||||  ||||||||||    
T  13734742 aaagaaaataacaataataataaaagaggtgtcttaggatcattggtccgtcatggtgacaaatg 13734678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 25950037 - 25949920
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattg 424  Q
    |||||||| ||||||||||| ||||||||| |||||||| |||| |||||||||  ||||||||| ||||||||||||||||||||  ||||||||||||    
T  25950037 ttttaatactgattagatgaaagtttcaaacgttaaaaagtttggatttttaatcaaaagaaaataacaataataataaaagggtgtcttgggattattg 25949938  T
Q  425 gtccgtcaaagtgacaaa 442  Q
    ||||||||||||||||||    
T  25949937 gtccgtcaaagtgacaaa 25949920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 25964632 - 25964514
Alignment:
Q  330 ataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataata------ataaaagggtgctttgggattatt 423  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||  ||||||||      ||||||||||||  ||||||||||    
T  25964632 ataatgattagatgaaagtttcaaaagttaaaaagtttggatttttaattgaaagaaaataccaataataataataataaaagggtgccctgggattatt 25964533  T
Q  424 ggtccgtcaaagtgacaaa 442  Q
    |||||||||||||||||||    
T  25964532 ggtccgtcaaagtgacaaa 25964514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 25969279 - 25969161
Alignment:
Q  330 ataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataata------ataaaagggtgctttgggattatt 423  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||  ||||||||      ||||||||||||  ||||||||||    
T  25969279 ataatgattagatgaaagtttcaaaagttaaaaagtttggatttttaattgaaagaaaataccaataataataataataaaagggtgccctgggattatt 25969180  T
Q  424 ggtccgtcaaagtgacaaa 442  Q
    |||||||||||||||||||    
T  25969179 ggtccgtcaaagtgacaaa 25969161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 25973719 - 25973601
Alignment:
Q  330 ataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataata------ataaaagggtgctttgggattatt 423  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||  ||||||||      ||||||||||||  ||||||||||    
T  25973719 ataatgattagatgaaagtttcaaaagttaaaaagtttggatttttaattgaaagaaaataccaataataataataataaaagggtgccctgggattatt 25973620  T
Q  424 ggtccgtcaaagtgacaaa 442  Q
    |||||||||||||||||||    
T  25973619 ggtccgtcaaagtgacaaa 25973601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 17744166 - 17744102
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| | |||||||||||||||| |||| |||||||||| |||||||||    
T  17744166 ttttaataatgattagatgaaaatttcaaaggttaaaaagtttggatttttaattaaaagaaaat 17744102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 4188870 - 4188807
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  4188870 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 4188807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 19074705 - 19074768
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  19074705 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 19074768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 17283443 - 17283520
Alignment:
Q  365 tttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaa 442  Q
    |||| ||||||||  ||| | |||| ||||||||||||||| ||||| |||||||||||||| ||||| | |||||||    
T  17283443 tttggatttttaaccgaatgtaaataacaataataataaaaaggtgcattgggattattggttcgtcataatgacaaa 17283520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 26474596 - 26474548
Alignment:
Q  395 taataataaaagggtgctttgggattattggtccgtcaaagtgacaaat 443  Q
    |||||||||||| | |||||||||||||||||||||||| | |||||||    
T  26474596 taataataaaagagagctttgggattattggtccgtcaaggagacaaat 26474548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 443
Target Start/End: Complemental strand, 14894139 - 14894027
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 428  Q
    |||||||||||||||| ||||| | |  ||||||| |||| ||||| ||||||| |||||| | ||||||||||| |  | || |||||||||||||| |    
T  14894139 aataatgattagatgaaagtttgaga--ttaaaaagtttggattttcaattgaatgaaaataataataataataataaagcgccttgggattattggttc 14894042  T
Q  429 gtcaaagtgacaaat 443  Q
     |||  |||||||||    
T  14894041 atcatggtgacaaat 14894027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 19569539 - 19569611
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 403  Q
    |||||||||||||||||||||| | |  ||| ||| |||| |||||||||| ||||||||| | |||||||||||    
T  19569539 aataatgattagatgagagtttgaga--ttataaagtttggatttttaattaaaagaaaataataataataataa 19569611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 23493027 - 23492974
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaatt 379  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  23493027 ttttaaaaatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaatt 23492974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 18449480 - 18449443
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaa 362  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  18449480 ttttaataatgattagatgaaggtttcaaaggttaaaa 18449443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 26018624 - 26018556
Alignment:
Q  373 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaa 441  Q
    ||||||| ||||||||| |||||||||| | ||  | || |||||||||||||| ||||| ||||||||    
T  26018624 tttaattaaaagaaaataacaataataaaataaaagcgccttgggattattggttcgtcatagtgacaa 26018556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 325 - 432
Target Start/End: Complemental strand, 23341279 - 23341173
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattg 424  Q
    |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| || | ||||||||||||||||| ||||||||||||    
T  23341279 ttttaacaatgattagatgaaagtttcaaaggttaaaaattttggatttttaattgaaagaaaagta-actaataataaaagggtgccttgggattattg 23341181  T
Q  425 gtccgtca 432  Q
    ||||||||    
T  23341180 gtccgtca 23341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 20282840 - 20282776
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||| |||||||||    
T  20282840 ttttaataatgattagatgaaggtttcgaaggttaaaaagtttgaatttttaattaaaagaaaat 20282776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 32440778 - 32440847
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataa 400  Q
    |||||||||||||||||||||| | |  ||| ||| |||| |||||||||| ||||||||| | ||||||||    
T  32440778 aataatgattagatgagagtttgata--ttataaagtttggatttttaattaaaagaaaataataataataa 32440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 17051447 - 17051347
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattg 424  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||  ||||||||||||    
T  17051447 ttttaataatgattagatgaaagtttgaaaggttaaaaagtttgaatttttaattgaaagaaaataacaataataataaaa-agtgtcttgggattattg 17051349  T
Q  425 gt 426  Q
    ||    
T  17051348 gt 17051347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 3244438 - 3244502
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| |||||||||    
T  3244438 ttttaataatgattagatgaaagtttcgaaggttaaaaagtttggatttttaattaaaagaaaat 3244502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 47975522 - 47975443
Alignment:
Q  325 ttttaataatgattagat-gagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 403  Q
    |||||| ||||||||||| || |||||||||||| ||||| ||||||||||||||| ||||||||| | |||||||||||    
T  47975522 ttttaacaatgattagattgaaagtttcaaaggtcaaaaagtttgaatttttaattaaaagaaaataataataataataa 47975443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 3249569 - 3249631
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaa 387  Q
    |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| |||||||    
T  3249569 ttttaataatgattagatgaaagtttcgaaggttaaaaagtttggatttttaattaaaagaaa 3249631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 1991543 - 1991480
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaa 388  Q
    |||||||||||||||||||| |||||| |||||| |||| |||| |||||||||| ||||||||    
T  1991543 ttttaataatgattagatgaaagtttcgaaggtttaaaagtttggatttttaattaaaagaaaa 1991480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 2722668 - 2722554
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa---aagggtgctttgggattattgg 425  Q
    ||||||||||||||||||||||  ||| ||| ||| |||| |||||||||| ||||||||| | |||||||||||   || || || |||||||||||||    
T  2722668 aataatgattagatgagagttt--aagattataaagtttggatttttaattaaaagaaaataataataataataataaaaaggcgcattgggattattgg 2722571  T
Q  426 tccgtcaaagtgacaaa 442  Q
    | ||||| | |||||||    
T  2722570 ttcgtcataatgacaaa 2722554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 10607640 - 10607703
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  10607640 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 10607703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 16384814 - 16384878
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| |||||||||||||||||  || || |||||||||  ||||||||    
T  16384814 ttttaataatgattagatgaaagtttcaaaggttaaaagtttggattttttaattataagaaaat 16384878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 26169643 - 26169696
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaatt 379  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  26169643 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaatt 26169696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 10601328 - 10601365
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaa 362  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10601328 ttttaataatgattagatgaaagtttcaaaggttaaaa 10601365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 16034759 - 16034694
Alignment:
Q  378 ttgaaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaa 442  Q
    |||||||||||| |||||||||||||||| ||||  |||||||||||||| ||||| | |||||||    
T  16034759 ttgaaagaaaataacaataataataaaagaggtgtcttgggattattggttcgtcataatgacaaa 16034694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 432
Target Start/End: Complemental strand, 36079772 - 36079674
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 428  Q
    ||||||||||||||||||||||   || ||| ||| |||| |||||||||| |||||||| || |||||||  ||||| | || |||||||||||||||     
T  36079772 aataatgattagatgagagttt--gagattataaagtttggatttttaattaaaagaaaa-tataataata--aaaagagagccttgggattattggtct 36079678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 42243920 - 42243993
Alignment:
Q  329 aataatgattagat-gagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 403  Q
    |||||||||||||| |||||||| | |  ||||||| |||| ||||||||||||| |||||| | |||||||||||    
T  42243920 aataatgattagattgagagtttgaga--ttaaaaagtttggatttttaattgaatgaaaataataataataataa 42243993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 5487 - 5567
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaa 405  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||    
T  5487 ttttaataatgattagatgaaagtttcaaaggttaaaaaatttggatttttaattaaaagaaaataataataataataaaa 5567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 11981 - 12045
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  11981 ttttaataatgattagatgaaagtttcaaaggttaaaaagtttgaatttttaattaaaagaaaat 12045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 20915363 - 20915444
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaag 406  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||||||| | || || ||||||||    
T  20915363 ttttaataatgattaaatgaaagtttcaaaggttaaaaagtttgaatttttaattggaagaaaataataaaaaaaataaaag 20915444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 25577011 - 25577074
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| | || ||||||||||||||| ||||    
T  25577011 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtctggatttttaattgaaagtaaat 25577074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 34781037 - 34780974
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  34781037 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 34780974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 20167624 - 20167670
Alignment:
Q  386 aaattacaataataataaaagggtgctttgggattattggtccgtca 432  Q
    |||| ||||||||||||||| ||||  ||||||||||||||||||||    
T  20167624 aaataacaataataataaaaaggtgtcttgggattattggtccgtca 20167670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 20968444 - 20968407
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaa 362  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  20968444 ttttaataatgactagatgaaagtttcaaaggttaaaa 20968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 23435970 - 23435933
Alignment:
Q  395 taataataaaagggtgctttgggattattggtccgtca 432  Q
    |||||||||||||| || ||||||||||||||||||||    
T  23435970 taataataaaagggagccttgggattattggtccgtca 23435933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 23447337 - 23447300
Alignment:
Q  395 taataataaaagggtgctttgggattattggtccgtca 432  Q
    |||||||||||||| || ||||||||||||||||||||    
T  23447337 taataataaaagggagccttgggattattggtccgtca 23447300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 11048984 - 11048920
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||  ||||||||    
T  11048984 ttttaataatgattagatgaaagtttcaaaggttaaaaagtttggatttttaattcgaagaaaat 11048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 442
Target Start/End: Original strand, 11902001 - 11902112
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 428  Q
    |||||||||||||||||| ||| | |  ||| ||| |||| |||||||| |||| |||||| ||||||||||||||| || || |||||||||||||| |    
T  11902001 aataatgattagatgagaatttgaga--ttataaagtttggatttttaactgaatgaaaataacaataataataaaaaggcgccttgggattattggttc 11902098  T
Q  429 gtcaaagtgacaaa 442  Q
    |||| | |||||||    
T  11902099 gtcataatgacaaa 11902112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 40559949 - 40560012
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    ||||||||||||| |||||| ||||||||||||| |||| |||| ||||||||||||||| ||||    
T  40559949 ttttaataatgatcagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaaggaaat 40560012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 10731896 - 10731824
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 403  Q
    |||||||||||||||||||||| | |  ||| ||| ||||||||||||||| ||||||||| | |||||||||||    
T  10731896 aataatgattagatgagagtttgaga--ttataaagtttgaatttttaattaaaagaaaataataataataataa 10731824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 10945665 - 10945593
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 403  Q
    |||||||||||||||||||||| | |  ||| ||| ||||||||||||||| ||||||||| | |||||||||||    
T  10945665 aataatgattagatgagagtttgaga--ttataaagtttgaatttttaattaaaagaaaataataataataataa 10945593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 8561753 - 8561810
Alignment:
Q  386 aaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaat 443  Q
    |||| ||||||||||||||| ||||| ||| |||||||||| |||||  |||||||||    
T  8561753 aaataacaataataataaaaaggtgccttgagattattggttcgtcatggtgacaaat 8561810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 17987285 - 17987221
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    ||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||| ||||||||    
T  17987285 ttttaataatgattagatgaatgtttcaaaggttaaaaagtttggatttttaattggaagaaaat 17987221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 18379595 - 18379659
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||| ||| |||||    
T  18379595 ttttaataatgattagatgaaagtttcaaagattaaaaagtttggatttttaattaaaacaaaat 18379659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 41229008 - 41228946
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaa 388  Q
    ||||||||||||||| |||| ||||||||||||| |||| |||| |||||||||||||||||||    
T  41229008 ttttaataatgattaaatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaagaaaa 41228946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 21240778 - 21240681
Alignment:
Q  329 aataatgattagat-gagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggt 426  Q
    |||||||||||| | || |||||||||||||||||| |||| ||||||  || || |||||| ||||||||||||||| || || ||||||||||||||    
T  21240778 aataatgattagtttgaaagtttcaaaggttaaaaagtttggatttttgttttaa-gaaaataacaataataataaaaaggcgccttgggattattggt 21240681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 23289364 - 23289423
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||  ||||||||    
T  23289364 aataatgattagatgaaagtttcaaaggtt-aaaagtttgaatttttaattataagaaaat 23289423  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 39286041 - 39286104
Alignment:
Q  381 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaat 443  Q
    ||||||||| |||||||||||||||| ||||  ||||||||||||||||||||  |||||||||    
T  39286041 aaagaaaataacaataataataaaagaggtgtcttgggattattggtccgtcatggtgacaaat 39286104  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 41802973 - 41802881
Alignment:
Q  333 atgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtca 432  Q
    |||||||||||| |||||||||||||||||| |||  ||||||||||  ||||||||   ||||| |||||||  | || ||||||||||||||||||||    
T  41802973 atgattagatgaaagtttcaaaggttaaaaagttttgatttttaatt--aagaaaat---aataaaaataaaa--gagccttgggattattggtccgtca 41802881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 44538914 - 44538852
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| | |||||||||||  |||| ||| |||||||||| |||||||||    
T  44538914 ttttaataatgattagatgaaaatttcaaaggtt--aaaagttggatttttaattaaaagaaaat 44538852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 20405428 - 20405365
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  20405428 ttttaacaatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 20405365  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 20412962 - 20412893
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataa 400  Q
    ||||||||||||||||||||||   || |||| || |||| |||||||||| ||||||||| ||||||||||    
T  20412962 aataatgattagatgagagttt--gagattaagaagtttggatttttaattaaaagaaaataacaataataa 20412893  T

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Target: scaffold0197 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 8210 - 8306
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 428  Q
    |||||||||||||||| | |||||||||||||||| |||| ||||||||||  ||||||||   ||||| |||||||  | |||||||||||||||||||    
T  8210 aataatgattagatgaaaatttcaaaggttaaaaagtttggatttttaatt--aagaaaat---aataaaaataaaa--gagctttgggattattggtcc 8302  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 442
Target Start/End: Complemental strand, 15760290 - 15760179
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 428  Q
    |||||||||||||||||||||| | |  ||| ||| |||| |||||||| |||| |||||| ||||||||||||||| || |  |||||||||||||| |    
T  15760290 aataatgattagatgagagtttgaga--ttataaagtttggatttttaactgaatgaaaataacaataataataaaaaggcgtcttgggattattggttc 15760193  T
Q  429 gtcaaagtgacaaa 442  Q
    |||| | |||||||    
T  15760192 gtcataatgacaaa 15760179  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 33633163 - 33633100
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    ||||||||||||| |||||| ||||||||||||| |||| |||| ||||||||||||||| ||||    
T  33633163 ttttaataatgatcagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaaggaaat 33633100  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 25397662 - 25397567
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggt 426  Q
    |||||||||||||||||||||| | |  ||| ||| |||||||||||||   || |||||| ||||||||| ||||| || || ||||||||||||||    
T  25397662 aataatgattagatgagagtttgaga--ttataaagtttgaatttttaacataatgaaaataacaataatattaaaaaggcgccttgggattattggt 25397567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 23694488 - 23694436
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaatt 379  Q
    |||||||||||||||||||| | |||||||||||  |||||||| ||||||||||    
T  23694488 ttttaataatgattagatgaaaatttcaaaggtt--aaaatttggatttttaatt 23694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 14877701 - 14877779
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaag 406  Q
    |||||||||||||||||||| ||||||||| |||  |||| ||| |||||||| | ||||||||| | ||||| ||||||||    
T  14877701 ttttaataatgattagatgaaagtttcaaaagtt--aaaagttggatttttaa-taaaagaaaataaaaataaaaataaaag 14877779  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 18959887 - 18959829
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    ||||||||||||||||||||||  ||| ||| ||| |||| ||||||||||||| ||||||    
T  18959887 aataatgattagatgagagttt--aagattagaaagtttggatttttaattgaatgaaaat 18959829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 24621 - 24684
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| || | ||||||||||||||||||||    
T  24621 ttttaataatgattagatgaaagtttcaaaggtt-aaaagttcggatttttaattgaaagaaaat 24684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 21184 - 21121
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||| ||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||    
T  21184 ttttaataataattagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaagaaaat 21121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 53524 - 53461
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||| ||||    
T  53524 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaaggaaat 53461  T

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Target: scaffold0450 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 142 - 79
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  142 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 79  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 27660 - 27723
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  27660 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 27723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 51133 - 51192
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||| ||||||||||||| |||| |||| |||||||||| |||||||||    
T  51133 aataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattaaaagaaaat 51192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 13701 - 13764
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  13701 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 13764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 18294 - 18331
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaa 362  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18294 ttttaataatgattagatgaaagtttcaaaggttaaaa 18331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 43372 - 43335
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaa 362  Q
    |||||||||||||||||||| |||||||||||||||||    
T  43372 ttttaataatgattagatgaaagtttcaaaggttaaaa 43335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 15973 - 15940
Alignment:
Q  329 aataatgattagatgagagtttcaaaggttaaaa 362  Q
    |||||||||||||||| |||||||||||||||||    
T  15973 aataatgattagatgaaagtttcaaaggttaaaa 15940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 6128 - 6196
Alignment:
Q  373 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaa 441  Q
    ||||||| ||||||||| |||||||||| | ||  | || |||||||||||||| ||||| ||||||||    
T  6128 tttaattaaaagaaaataacaataataaaataatagcgccttgggattattggttcgtcatagtgacaa 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 182055 - 182118
Alignment:
Q  325 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 389  Q
    |||||||||||| || |||| |||||||||| || |||| |||| ||||||||||||||| ||||    
T  182055 ttttaataatgaatatatgaaagtttcaaagatt-aaaagtttggatttttaattgaaaggaaat 182118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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