View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_5 (Length: 481)
Name: NF0848_low_5
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 69 - 412
Target Start/End: Original strand, 36342864 - 36343205
Alignment:
| Q |
69 |
gagagaaaagaaaaatattaatgatgtattggtattataaagtgacatgtaataagttaaaaataannnnnnnnnnnaaagtgacttatattaaaataag |
168 |
Q |
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| T |
36342864 |
gagagaaaagaaaaatattaatgatgtattggtattataaagagacatgtaataagttaattttt-tttttttttttaaagtgacttatattaaaacaag |
36342962 |
T |
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| Q |
169 |
gatgaatcttgttnnnnnnnntaaagggacaacaatggaggaagcactatgtagatatttttggatacttttaaaaattaacataataaagtgatgttat |
268 |
Q |
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| T |
36342963 |
gatgaatcttgttaaaaaaa-taaagggacaacaatggaggaagcactatgtagatatttgtggatacttttaaaaattaacataataaagtgatgttat |
36343061 |
T |
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| Q |
269 |
ggtgtgatttaattaatggatcatgctttttgtagagaattaatggatcatgctaactaatgatcttagagcatggaagtagaaaatagaaatcgtttgt |
368 |
Q |
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| T |
36343062 |
ggtgtgatttaattaatggatcatgctttttttagagaattaatggatcatgctaactaatgatcttcgagcatggaagtagaaaatagaaatcgtttgt |
36343161 |
T |
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| Q |
369 |
tgaaaataataattttttgacatgaaagttgaatatatcctttt |
412 |
Q |
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| T |
36343162 |
taaaaataataattttttgacttgaaagttgaatatatcctttt |
36343205 |
T |
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