View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_low_7 (Length: 477)
Name: NF0848_low_7
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 125 - 467
Target Start/End: Complemental strand, 26130963 - 26130621
Alignment:
| Q |
125 |
aagtttctttgctggtataagaaccacatgttgttgtgaggcactccatagccacatcaaacattatgtgcattctcggataaatatgactgattttgtt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26130963 |
aagtttctttgctggtataagaaccacatgttgttgtgaggcactccatagccacatcaaacaatatgtgcattctcggataaatatgactgattttgtt |
26130864 |
T |
|
| Q |
225 |
caacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaatatggtcaaccaatgatgcagactagtttgcgat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26130863 |
caacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaatatggtcaaccaatgatgcaaactagtttgcgat |
26130764 |
T |
|
| Q |
325 |
cactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttcttaaaattacagaatgcca |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26130763 |
cactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttcttaaaatgacagaatgcca |
26130664 |
T |
|
| Q |
425 |
cgaaatgtctacgtggtatattttcacagtttcaacatattgt |
467 |
Q |
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| T |
26130663 |
cgaaatgtctacgtggtatattttcacagtttcaaaatattgt |
26130621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 125 - 451
Target Start/End: Original strand, 11010631 - 11010956
Alignment:
| Q |
125 |
aagtttctttgctggtataagaaccacatgttgttgtgaggcactccatagccacatcaaacattatgtgcattctcggataaatatgactgattttgtt |
224 |
Q |
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|||||||||||||| |||||||||||| | | ||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| |||||| |
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| T |
11010631 |
aagtttctttgctgatataagaaccacctttcgttgtgaggcactccatagccacatgggacaatacgtgcattctcggataaacatgactggttttgtg |
11010730 |
T |
|
| Q |
225 |
caacaatttcataaatgtcttacatattttcggtttagggaaattaaatctgatttcctatcaaaatatggtcaaccaatgatgcagactagtttgcgat |
324 |
Q |
| |
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||||| || |||| ||| | |||| |||| |||| ||||||||| |||||||| || ||| || ||||||| || |||||||||| ||||| || | |
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| T |
11010731 |
caacagttccataggtgtttaacat-tttttggttcagggaaattttatctgattaccaatccaattatggtctgcctgtgatgcagaccagtttacgtt |
11010829 |
T |
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| Q |
325 |
cactggagaaatcggcagaaattcagttcacaaaggagatatttgtcatgtttcggtctattatgaaaagatcaatgcttcttaaaattacagaatgcca |
424 |
Q |
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|| | |||||||| | | | |||||| || |||| ||| ||| | |||||||| | | ||||||||||| ||||||||| | |||||||| |||| |
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| T |
11010830 |
cattagagaaatctgtggctaatcagtttacgaaggcgatttttcttatgtttcgtaccgtgctgaaaagatcattgcttcttagagttacagaaagcca |
11010929 |
T |
|
| Q |
425 |
cgaaatgtctacgtggtatattttcac |
451 |
Q |
| |
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||||| || | | ||||||||||||| |
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| T |
11010930 |
agaaatttccatggggtatattttcac |
11010956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 300
Target Start/End: Original strand, 21428434 - 21428577
Alignment:
| Q |
157 |
gttgtgaggcactccatagccacatcaaacattatgtgcattctcggataaatatgactgattttgttcaacaatttcataaatgtcttacatattttcg |
256 |
Q |
| |
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|||||||||| |||||||||||||| ||||| |||||||||||| || | ||| |||| |||||||||||||| |||| |||||||| |||||||| |
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| T |
21428434 |
gttgtgaggcgctccatagccacatgggacattttgtgcattctcgtattagcatggctgactttgttcaacaattccataggtgtcttacctattttcg |
21428533 |
T |
|
| Q |
257 |
gtttagggaaattaaatctgatttcctatcaaaatatggtcaac |
300 |
Q |
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||||||| ||||| |||||||||||| || || |||||||||| |
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| T |
21428534 |
gtttaggaaaattgaatctgatttccattccaactatggtcaac |
21428577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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