View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_high_1 (Length: 614)
Name: NF0849_high_1
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 3 - 425
Target Start/End: Original strand, 26515188 - 26515612
Alignment:
| Q |
3 |
catctccaacaatatgaatttcattttaagacaaagtttatacaaacatattttcaccccttaattatatatagatttaatgcagatgataactgactga |
102 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515188 |
catctccattaaaatgaattttattttaagacaaagtttatacaaacatattttcacctcttaattatatatagatttaatgcagatgataactgactga |
26515287 |
T |
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| Q |
103 |
aaaggtattgattgggtgttcggaccctacatcaatattgttcattgagcctaaacataattcaaaatctaatcaattgctaatgatgataaactttagt |
202 |
Q |
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| T |
26515288 |
aaaggtattgattgggttttcggaccctacatcaatattgttcattgagcctaaacataattcaaaatctaatcaattgctaatgatgataaactttagt |
26515387 |
T |
|
| Q |
203 |
aacaatgacggttacacaccatacaagaagaacaattgaaagattcaggaacaagttactaaatatttatgatgaatagtgaaggagagagctaatgaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515388 |
aacaatgacggttacacaccatacaagaagaacaatagaaagattgaggaacaagttactaaatatttatgatgaatagtgaaggagagagctaatgaaa |
26515487 |
T |
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| Q |
303 |
agtctcttaaaatcatataatgtattttcaatctcttcaaataaagtaaaatgtacata--ttatatgaaactgaaaaatgtggatgccgtttcaaattc |
400 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26515488 |
agtctcttaacatcatataatgtattttcaatctcttcaaataaagtaaaatgtacatagtatatatgaaactgaaaaatgtggatgccgtttcaaattc |
26515587 |
T |
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| Q |
401 |
ctttatcaaagtaaacagtttcaac |
425 |
Q |
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| T |
26515588 |
ctttatcaaagtaaacagtttcaac |
26515612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 26515643 - 26515705
Alignment:
| Q |
456 |
taaattatataactcaaattcttgtgttgctttctcataaaaatccatgttggtgaaggatgt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515643 |
taaattatataactcaaattcttgtgttgctttctcataaaaatccatgttggtgaaggatgt |
26515705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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