View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_high_16 (Length: 312)
Name: NF0849_high_16
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 38558686 - 38558401
Alignment:
| Q |
29 |
aacattctttgttccttttcacttctctgaatttttctatatatgatggtattgcaccatttctaattgctactttcataaagtatactctttttaatga |
128 |
Q |
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| T |
38558686 |
aacattctttgttccttttcacttctctgaatttttctatatatgatggtattgcaccatttctaattgctactttcataaagtatactctttttaatga |
38558587 |
T |
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| Q |
129 |
aattaacaaaaactg--tgagaattagttggtcaaaagttagataaataaagtttagcttttggtgctacctgcacccattaataatgctttacatttgt |
226 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38558586 |
aattaacaaaaactgtatgagaattagttggtcaaaagttagataaataaagtttagcttttggtgctacctgcacccattaataatgctttacatttgt |
38558487 |
T |
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| Q |
227 |
tggatttttcatatannnnnnnaaacgagataattttatttgagacgcgttgcgtattattaaatgtgaatatcctttataagtcg |
312 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
38558486 |
tggatttttcatattttttcttaaacaagataattttatttgagacgcgttgtgtattactaaatgtgaatatcctttataagtcg |
38558401 |
T |
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