View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0849_high_26 (Length: 254)

Name: NF0849_high_26
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0849_high_26
NF0849_high_26
[»] chr7 (22 HSPs)
chr7 (1-158)||(47457020-47457177)
chr7 (38-144)||(13311802-13311908)
chr7 (51-159)||(3478328-3478436)
chr7 (80-158)||(12480891-12480969)
chr7 (38-145)||(46133289-46133396)
chr7 (83-158)||(48058652-48058727)
chr7 (86-144)||(38306272-38306330)
chr7 (104-145)||(6716747-6716788)
chr7 (1-145)||(11379138-11379289)
chr7 (38-158)||(8745116-8745236)
chr7 (38-129)||(38485519-38485610)
chr7 (83-154)||(23983203-23983274)
chr7 (44-145)||(24324809-24324910)
chr7 (104-144)||(10244211-10244251)
chr7 (104-144)||(33435138-33435178)
chr7 (104-144)||(41089760-41089800)
chr7 (38-158)||(42533251-42533370)
chr7 (85-144)||(6584919-6584978)
chr7 (85-144)||(34389972-34390031)
chr7 (51-145)||(1320770-1320864)
chr7 (104-144)||(3419668-3419708)
chr7 (104-144)||(3867145-3867185)
[»] chr4 (17 HSPs)
chr4 (1-119)||(21987963-21988081)
chr4 (3-158)||(28966795-28966950)
chr4 (3-158)||(38929755-38929910)
chr4 (44-145)||(46698796-46698897)
chr4 (1-158)||(12296094-12296258)
chr4 (38-158)||(25753135-25753255)
chr4 (48-146)||(19815234-19815332)
chr4 (116-158)||(21983819-21983861)
chr4 (38-154)||(53823423-53823539)
chr4 (80-158)||(16501736-16501814)
chr4 (38-159)||(19673064-19673184)
chr4 (105-158)||(22811158-22811211)
chr4 (53-158)||(35800467-35800572)
chr4 (93-144)||(30167576-30167627)
chr4 (86-144)||(4305736-4305794)
chr4 (104-136)||(2061758-2061790)
chr4 (88-144)||(30964454-30964510)
[»] chr1 (17 HSPs)
chr1 (3-145)||(19598564-19598706)
chr1 (5-157)||(50589206-50589363)
chr1 (104-158)||(27102220-27102274)
chr1 (83-145)||(38544749-38544811)
chr1 (38-144)||(46814479-46814585)
chr1 (86-159)||(5389418-5389491)
chr1 (38-144)||(27031852-27031958)
chr1 (86-144)||(31585772-31585830)
chr1 (86-144)||(41920463-41920521)
chr1 (86-144)||(46692831-46692889)
chr1 (38-158)||(4651743-4651862)
chr1 (105-158)||(10785457-10785510)
chr1 (60-145)||(17033571-17033656)
chr1 (59-138)||(9313307-9313386)
chr1 (38-144)||(24658892-24658998)
chr1 (104-144)||(30685916-30685956)
chr1 (51-158)||(34774847-34774954)
[»] chr5 (15 HSPs)
chr5 (1-158)||(27712995-27713152)
chr5 (38-132)||(31721640-31721734)
chr5 (1-158)||(22675322-22675475)
chr5 (80-158)||(13954232-13954310)
chr5 (1-137)||(7392050-7392193)
chr5 (105-158)||(8297498-8297551)
chr5 (44-133)||(23426313-23426402)
chr5 (104-144)||(7195251-7195291)
chr5 (80-159)||(39024447-39024526)
chr5 (104-158)||(14302428-14302482)
chr5 (38-144)||(24072278-24072384)
chr5 (44-144)||(17854079-17854179)
chr5 (85-144)||(34378108-34378167)
chr5 (85-158)||(25992017-25992090)
chr5 (104-144)||(18593272-18593312)
[»] chr2 (23 HSPs)
chr2 (1-158)||(15126408-15126565)
chr2 (52-157)||(16959959-16960064)
chr2 (38-158)||(4471887-4472006)
chr2 (52-154)||(22885135-22885236)
chr2 (87-158)||(2062901-2062972)
chr2 (45-158)||(18681035-18681148)
chr2 (80-145)||(33788643-33788708)
chr2 (1-75)||(2062827-2062907)
chr2 (1-133)||(29487051-29487188)
chr2 (53-130)||(14566424-14566501)
chr2 (59-154)||(1269467-1269562)
chr2 (38-129)||(27739938-27740029)
chr2 (38-145)||(31902425-31902532)
chr2 (86-144)||(39338877-39338935)
chr2 (85-144)||(7874301-7874360)
chr2 (85-144)||(14405208-14405267)
chr2 (105-145)||(16952394-16952434)
chr2 (105-145)||(17023059-17023099)
chr2 (105-145)||(17060365-17060405)
chr2 (105-145)||(17079199-17079239)
chr2 (85-144)||(13337284-13337343)
chr2 (104-158)||(7695992-7696046)
chr2 (104-158)||(10173576-10173630)
[»] chr3 (18 HSPs)
chr3 (1-158)||(47945631-47945789)
chr3 (44-145)||(14193909-14194010)
chr3 (38-158)||(30935388-30935508)
chr3 (86-145)||(5556581-5556640)
chr3 (104-158)||(37123411-37123465)
chr3 (61-145)||(14879421-14879505)
chr3 (85-149)||(33143956-33144020)
chr3 (85-144)||(19176512-19176571)
chr3 (86-144)||(17550968-17551026)
chr3 (85-142)||(9584067-9584124)
chr3 (38-142)||(25594534-25594638)
chr3 (104-144)||(43012404-43012444)
chr3 (38-145)||(25647647-25647754)
chr3 (104-158)||(1652884-1652938)
chr3 (104-158)||(39021274-39021328)
chr3 (104-144)||(2392518-2392558)
chr3 (104-144)||(2394265-2394305)
chr3 (98-145)||(30127285-30127333)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-158)||(6485-6641)
[»] chr8 (17 HSPs)
chr8 (38-158)||(30236126-30236246)
chr8 (38-156)||(15906649-15906767)
chr8 (2-141)||(17720721-17720865)
chr8 (93-158)||(17657000-17657065)
chr8 (93-158)||(41791262-41791327)
chr8 (38-158)||(10552232-10552351)
chr8 (86-144)||(24995407-24995465)
chr8 (86-144)||(31207374-31207432)
chr8 (104-145)||(10248564-10248605)
chr8 (104-144)||(16457473-16457513)
chr8 (54-158)||(35062436-35062540)
chr8 (104-144)||(41893412-41893452)
chr8 (105-144)||(9519529-9519568)
chr8 (105-144)||(37986870-37986909)
chr8 (104-158)||(32945701-32945755)
chr8 (117-158)||(12198067-12198108)
chr8 (117-158)||(12442495-12442536)
[»] chr6 (12 HSPs)
chr6 (1-158)||(13098569-13098725)
chr6 (46-145)||(32935350-32935449)
chr6 (80-158)||(26534714-26534795)
chr6 (104-158)||(13423495-13423549)
chr6 (38-158)||(20701801-20701921)
chr6 (93-145)||(33968624-33968676)
chr6 (80-158)||(9224046-9224124)
chr6 (46-158)||(26216017-26216128)
chr6 (80-159)||(21264991-21265070)
chr6 (80-159)||(21266118-21266197)
chr6 (104-144)||(3117522-3117562)
chr6 (104-144)||(16510313-16510353)
[»] scaffold0200 (1 HSPs)
scaffold0200 (59-158)||(19367-19466)
[»] scaffold0119 (1 HSPs)
scaffold0119 (59-154)||(42140-42235)
[»] scaffold1613 (1 HSPs)
scaffold1613 (83-145)||(1028-1090)
[»] scaffold0050 (1 HSPs)
scaffold0050 (38-141)||(36670-36773)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 47457177 - 47457020
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    |||||||| |||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| || | ||||||||||||||||  |||    
T  47457177 ggagttggcgtctggctgcattcttgtttggctagcattctctggtggatcgggggtaaggggtgcccgtctgattaggtcctgaagtctgatggaccga 47457078  T
Q  101 ttgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47457077 tcgcttttgatttgagattgggagtcagttctttggctcaagtttagttatgggcttt 47457020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 13311802 - 13311908
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||||||||||| |||||||||||||||||||| | || || |||||| |||| ||||  ||||||||||||||| |||||||||||||||||     
T  13311802 ttctctggtggaccggggataaggggtgcccgtctggtttggtcatgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggt 13311901  T
Q  138 tcaagtt 144  Q
    |||||||    
T  13311902 tcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 3478328 - 3478436
Alignment:
Q  51 cgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagtta 150  Q
    ||||||| |||||||||| |||| || | |||| |||| || |||| ||||  ||||||||||||||| |||||| |||||||||||||||| ||||||     
T  3478328 cgggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattagttt 3478427  T
Q  151 tgggctttg 159  Q
    |||||||||    
T  3478428 tgggctttg 3478436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 12480891 - 12480969
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||| || |||| |||| |||||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||    
T  12480891 tcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttt 12480969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 46133396 - 46133289
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||||||||| ||| ||| |||||| |||| || | | |||||||||| || | |||| |||||||||| ||||| ||||||||||||| |||     
T  46133396 ttctctggtggaccggaggttaggagtgcccttctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggt 46133297  T
Q  138 tcaagttt 145  Q
    ||||||||    
T  46133296 tcaagttt 46133289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 48058727 - 48058652
Alignment:
Q  83 tgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||| ||||||||| |||||||||| ||||| || |||||||| |||||||||||||| ||| ||| ||||    
T  48058727 tgaagtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtttggttttggccttt 48058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 38306272 - 38306330
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  |||||||||||||||||||||||||||||||| ||||||||    
T  38306272 agtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagtt 38306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 6716788 - 6716747
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  6716788 cttttgattcgagatcgggagtcagttctttggctcaagttt 6716747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 11379289 - 11379138
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggca-------ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgat 93  Q
    ||||||||||||||||| || ||||||||||||| |        ||||| ||||||||| ||||  ||||||||| |||  || | || || |||||| |    
T  11379289 ggagttggtgtctagctacaatcttgtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttctaatttggtcatgtagtctggt 11379190  T
Q  94 gggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    | | |||| |||||||||||||||| |||||||||| |||||| ||||||||    
T  11379189 gagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagttt 11379138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 8745116 - 8745236
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| |||| |||| ||||||| || |||| || | |||| || |||| |||| ||||  ||||||||||||||| |||| ||||||| ||||     
T  8745116 ttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttgga 8745215  T
Q  138 tcaagtttagttatgggcttt 158  Q
    |||||||| ||| ||||||||    
T  8745216 tcaagtttggttttgggcttt 8745236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 38485519 - 38485610
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctgg-ttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagt 129  Q
    ||||| ||||||| ||||||||||||||||| ||||  || |||| ||||||||| |||| ||||  ||||||||||||||| ||||||||||    
T  38485519 ttctctggtggactgggggtaaggggtgcccttctgaatttgttc-tgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 23983203 - 23983274
Alignment:
Q  83 tgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatggg 154  Q
    ||||||||| ||||||||| | |||||||||||||| |||||||| ||| || |||||||||| ||| ||||    
T  23983203 tgaagtctggtgggtcgatcgtttttgattcgagatcgggagtcaattccttagctcaagtttggttttggg 23983274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 24324910 - 24324809
Alignment:
Q  44 ggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagt 143  Q
    |||| ||||||| | |||||||||| |||| || | || | |||| || |||| ||||   |||||||||||||| |||||||| |||||||||||||||    
T  24324910 ggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtcaattctttggctcaagt 24324811  T
Q  144 tt 145  Q
    ||    
T  24324810 tt 24324809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 10244211 - 10244251
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  10244211 cttttgattcgagatcgggagtcagttctttgactcaagtt 10244251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 33435138 - 33435178
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  33435138 cttttgattcgagatcgggagtcagttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 41089800 - 41089760
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  41089800 cttttgattcgagattgggagtcagctctttgactcaagtt 41089760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 42533370 - 42533251
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| | ||||||| ||||||||||  ||| || | |||| ||||||| ||||  |||  ||||||||||||||| |||||||| | |||||||    
T  42533370 ttctctggtgcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggc 42533271  T
Q  138 tcaagtttagttatgggcttt 158  Q
    | |||||| ||| ||||||||    
T  42533270 ttaagtttggtt-tgggcttt 42533251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 6584919 - 6584978
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||| |||| ||||  ||||||||||||||| ||||||||| ||||||||| |||||    
T  6584919 aagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagtt 6584978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 34389972 - 34390031
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||| |||| ||||  ||||||||||||||| ||||||||| ||||||||| |||||    
T  34389972 aagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagtt 34390031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 1320770 - 1320864
Alignment:
Q  51 cgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    ||||||| |||||||||| | || || | || | ||||||| |||| ||||  |||||||||| | || || |||||||||||||||||||||||    
T  1320770 cgggggtgaggggtgcccttttgatttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagttt 1320864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 3419708 - 3419668
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| ||||||||| |||||| ||||||||    
T  3419708 cttttgattcgagatcgggagtcagctctttgactcaagtt 3419668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 3867145 - 3867185
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||  |||||||||||||||| ||||||||    
T  3867145 cttttgattcgagaccgggagtcagttctttgactcaagtt 3867185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21988081 - 21987963
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||   |||    
T  21988081 ggagttggtgtctagctgcattcttgtttggctggcattctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgatgaaccga 21987982  T
Q  101 ttgcttttgattcgagatt 119  Q
    | |||||||||||||||||    
T  21987981 tcgcttttgattcgagatt 21987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 28966795 - 28966950
Alignment:
Q  3 agttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgatt 102  Q
    |||||| ||||||||||||||  ||||||||| |||||||| |||||||||||||||| || |||||||| ||||| |||||||||||| | || ||||     
T  28966795 agttggcgtctagctgcattcaggtttggctgacattctcaagtggaccgggggtaagtggcgcccgtctagttgggtcctgaagtctggtagggcgatc 28966894  T
Q  103 gcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  28966895 gtttttgattcgagattgggagtcagttctttggctcaagtttggttttgggcttt 28966950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 38929755 - 38929910
Alignment:
Q  3 agttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgatt 102  Q
    |||||| || |||||  |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||     
T  38929755 agttggcgtttagctctattcttgtttggttggcattctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatc 38929854  T
Q  103 gcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
     |||||||||||||||   ||||||||||||||||||||||||  || ||||||||    
T  38929855 acttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggcttt 38929910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 46698897 - 46698796
Alignment:
Q  44 ggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagt 143  Q
    ||||||||| ||||  ||||||||| |||| || | ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  46698897 ggtggaccgagggtgtggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagt 46698798  T
Q  144 tt 145  Q
    ||    
T  46698797 tt 46698796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 12296094 - 12296258
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggc-------attctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgat 93  Q
    |||||||| |||||||||||||||| ||||||| ||       || |||  |||||||||||||||||||||||| ||||||| | |||||||||||| |    
T  12296094 ggagttggcgtctagctgcattcttatttggctagctacggtgatcctctagtggaccgggggtaaggggtgcccctctggtttggtcctgaagtctggt 12296193  T
Q  94 gggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    | | |||  ||||||||||||||||    |||||||||||||| ||||||||  || ||||||||    
T  12296194 gtgccgagcgcttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggcttt 12296258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 25753135 - 25753255
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| ||||| ||| ||| ||||||||||  || | |||| ||||||| |||| ||||  ||||||||||||||| ||||||||||||||||||    
T  25753135 ttctctggtgtaccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggc 25753234  T
Q  138 tcaagtttagttatgggcttt 158  Q
    ||||||||  || ||||||||    
T  25753235 tcaagtttgattttgggcttt 25753255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 19815332 - 19815234
Alignment:
Q  48 gaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttta 146  Q
    |||||||||| |||||||||| |||| || | |||| ||||||| |||  ||||| ||||| |||||||||  ||||||||||||||||||||||||||    
T  19815332 gaccgggggtgaggggtgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagttta 19815234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 21983861 - 21983819
Alignment:
Q  116 gattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21983861 gattgggagtcagttctttggctcaagtttagttatgggcttt 21983819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 53823539 - 53823423
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| ||||| ||| |||||||||| |||| || | || | ||||||| |||  | ||  ||||||||||||||| ||||||||||||||||||    
T  53823539 ttctctggtgtaccggaggtgaggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggc 53823440  T
Q  138 tcaagtttagttatggg 154  Q
    |||||||| ||| ||||    
T  53823439 tcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 16501736 - 16501814
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||| || |||| |||| |||||||||||||||| ||||||||| ||||||| || ||||| ||| ||||||||    
T  16501736 tcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggcttt 16501814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 19673064 - 19673184
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| ||| || ||||||| |||||||||| |||| || | |||| ||||||| |||  | ||| | ||| |||||||||  |||||||||||||||||    
T  19673064 ttctctggttgatcgggggtgaggggtgcccttctgttttggtcctaaagtctggtggacc-attcccttttattcgagatcaggagtcagttctttggc 19673162  T
Q  138 tcaagtttagttatgggctttg 159  Q
    |||||||||||| |||| ||||    
T  19673163 tcaagtttagttttgggttttg 19673184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 22811211 - 22811158
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||| | ||||||    
T  22811211 tttttattcgagatcgggagtcagttctttggctcaagtttggttttaggcttt 22811158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 35800467 - 35800572
Alignment:
Q  53 ggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatg 152  Q
    |||||||| ||||||| |||| || | | |||||||||| ||   |||| |||||||||||||||| || |||||||||||||  || ||||| ||| ||    
T  35800467 ggggtaagtggtgcccttctgatttggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttg 35800566  T
Q  153 ggcttt 158  Q
    ||||||    
T  35800567 ggcttt 35800572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 30167627 - 30167576
Alignment:
Q  93 tgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||  ||||||||||||||| ||||||| |||||||| ||||||||    
T  30167627 tgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagtt 30167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 4305736 - 4305794
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||| ||||||||| ||||||||    
T  4305736 agtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtctcaagtt 4305794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 2061790 - 2061758
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttgg 136  Q
    ||||||||||||||||| |||||||||||||||    
T  2061790 cttttgattcgagattgagagtcagttctttgg 2061758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 30964454 - 30964510
Alignment:
Q  88 tctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||| ||||  ||||||||||| ||| ||||||| |||||||| ||||||||    
T  30964454 tctgatgggccgatcacttttgattcgtgatcgggagtccgttctttgactcaagtt 30964510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 19598564 - 19598706
Alignment:
Q  3 agttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgatt 102  Q
    |||||| ||||||||||||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||     
T  19598564 agttggcgtctagctgcatttttgcttggctgacattctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatc 19598663  T
Q  103 gcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||||||||| | |||||||||||||| |||||||||    
T  19598664 gcttttgattcgagatcgagagtcagttctttgactcaagttt 19598706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 50589363 - 50589206
Alignment:
Q  5 ttggtgtctagctgcattcttgtttggctggca-----ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcg 99  Q
    |||| |||||||||| ||||||||||||||||      ||||| ||||||| ||||||||||||||||||||||||||| |||||||||| | ||||  |    
T  50589363 ttggcgtctagctgctttcttgtttggctggctacggtttctctggtggactgggggtaaggggtgcccgtctggttgggtcctgaagtccggtgggctg 50589264  T
Q  100 attgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggctt 157  Q
    || ||||||||||||| || ||||| |||||||||||| ||||||| ||| |||||||    
T  50589263 atcgcttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggctt 50589206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 27102220 - 27102274
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||    
T  27102220 cttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggcttt 27102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 38544811 - 38544749
Alignment:
Q  83 tgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    ||||||||| |||| |||| |||||||||||||||| ||||||||||||||||| | ||||||    
T  38544811 tgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttt 38544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 46814585 - 46814479
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| |||||||| |||||||||||  ||| || | | || ||||||| |||| ||||  ||||||||||||||| ||||||||| | ||||||    
T  46814585 ttctctggtgtaccgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggc 46814486  T
Q  138 tcaagtt 144  Q
    |||||||    
T  46814485 tcaagtt 46814479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 5389491 - 5389418
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggctttg 159  Q
    ||||||| ||| ||||  ||||||||||||||| |||||||||||||||| |||||||||  || |||||||||    
T  5389491 agtctgaagggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggctttg 5389418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 27031958 - 27031852
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| |||||||| |||||||||||  ||| || | | || ||||||  |||| ||||  ||||||||||||||| | ||||||| ||||||||    
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  138 tcaagtt 144  Q
    |||||||    
T  27031858 tcaagtt 27031852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 31585830 - 31585772
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  31585830 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 31585772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 41920463 - 41920521
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  41920463 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 41920521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 46692889 - 46692831
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||| ||||||||||||||||||    
T  46692889 agtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagtt 46692831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 4651743 - 4651862
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctg-gttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttgg 136  Q
    ||||| |||| |||||||||||||||||||| ||||  || ||||| ||||||||  ||| ||||  ||||||||||||||| ||||||||| ||| |||    
T  4651743 ttctctggtgtaccgggggtaaggggtgcccttctgaatttgttcc-gaagtctggggggccgatcacttttgattcgagatcgggagtcag-tctctgg 4651840  T
Q  137 ctcaagtttagttatgggcttt 158  Q
     || ||||| ||| ||||||||    
T  4651841 ttctagtttggttttgggcttt 4651862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 10785510 - 10785457
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||    
T  10785510 ttttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggcttt 10785457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 17033571 - 17033656
Alignment:
Q  60 ggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    ||||||||| |||| || | ||||  |||||| |||| ||||  ||||||| ||||||| ||||||||||||||||| ||||||||    
T  17033571 ggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagttt 17033656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 9313386 - 9313307
Alignment:
Q  59 aggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggct 138  Q
    |||||||||| |||| || | |||| ||||||  ||||  |||  ||||||||||||||| |||||||||||||||||||    
T  9313386 aggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttggct 9313307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 24658892 - 24658998
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| | |||||| |||||||||||  ||| || | | || ||||||| |||| | ||  ||||||||||||||| ||||||||| ||||||||    
T  24658892 ttctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggc 24658991  T
Q  138 tcaagtt 144  Q
    | |||||    
T  24658992 tgaagtt 24658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 30685956 - 30685916
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||| ||||| |||||||||||||||| ||||||||    
T  30685956 cttttgatttgagatcgggagtcagttctttgactcaagtt 30685916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 34774847 - 34774954
Alignment:
Q  51 cgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttcttt-ggctcaagtttagtt 149  Q
    ||||||| || ||||||| |||| || | |||| | ||||| |||  ||||  |||||||| |||||| ||||||||||| ||| |||||||||||||||    
T  34774847 cgggggtgagtggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttgat-cgagatcgggagtcagtttttttggctcaagtttagtt 34774945  T
Q  150 atgggcttt 158  Q
     ||||||||    
T  34774946 ttgggcttt 34774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27712995 - 27713152
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    |||||||| |||||| ||||||||||||||| |||||||||| ||||||| |||| |||||| ||||||||||||||| |||||||||||  |||| |||    
T  27712995 ggagttggcgtctagatgcattcttgtttggttggcattctctggtggactggggataagggttgcccgtctggttgggtcctgaagtctagtgggccga 27713094  T
Q  101 ttgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    | | |||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  27713095 tcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggcttt 27713152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 31721640 - 31721734
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggt-tggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttct 132  Q
    ||||| ||||||||||||||||||||||||| |||| | |||||| |||||||| ||||| |||| |||||||||||||||| |||||||||||||    
T  31721640 ttctctggtggaccgggggtaaggggtgcccttctgatgtggttc-tgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttct 31721734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 22675475 - 22675322
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    |||||||| ||||||||||||| | ||||| |   ||||||| ||||||||||   |||||| |   ||||| ||||| | || ||||||| |||  |||    
T  22675475 ggagttggcgtctagctgcattttggtttgacgaacattctctggtggaccgg---taaggg-tattcgtctagttgggttctaaagtctggtggaccga 22675380  T
Q  101 ttgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    | | |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  22675379 tcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggcttt 22675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 13954310 - 13954232
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||| ||||||| |||| ||||  ||||||||||||||| |||||||| | ||||||||||||||| ||| ||||||||    
T  13954310 tcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttggttttgggcttt 13954232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 7392193 - 7392050
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcatt-------ctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgat 93  Q
    |||||||||||||||||||| |||||||||||| |  ||       ||| | || |||| |||| |||||||||| |||| || | |||| ||||||| |    
T  7392193 ggagttggtgtctagctgcaatcttgtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggtcctaaagtctggt 7392094  T
Q  94 gggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||  ||||  ||||||||||||||| ||||||||||||||||||    
T  7392093 ggaccgatcacttttgattcgagatcgggagtcagttctttggc 7392050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 8297498 - 8297551
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggacttt 8297551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 23426313 - 23426402
Alignment:
Q  44 ggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctt 133  Q
    ||||||| |||| | ||||||  |||||||||| | |||||||||||| |||  |||   ||||||||||||||||||||||||||||||    
T  23426313 ggtggactggggtttaggggtaaccgtctggtttggtcctgaagtctggtggaccgaacacttttgattcgagattgggagtcagttctt 23426402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 7195291 - 7195251
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  7195291 cttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 39024526 - 39024447
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggctttg 159  Q
    ||||||||| || ||| || || |||||||||||||||| |||||||| |||||||| |||||||| ||| |||| ||||    
T  39024526 tcctgaagtttggtggctcaatcgcttttgattcgagatcgggagtcacttctttggttcaagtttggttttgggttttg 39024447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 14302482 - 14302428
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||| ||||||||||||||||||||||||||  ||||||| ||| ||||||||    
T  14302482 cttttggttcgagattgggagtcagttctttggagcaagtttggttttgggcttt 14302428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 24072384 - 24072278
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| ||||||||| ||||  ||||||||| |||| || | |||| ||||||| | ||  ||| |||||||||| ||||| || ||||||||||||||     
T  24072384 ttctctggtggaccgagggtttggggtgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctttggt 24072285  T
Q  138 tcaagtt 144  Q
    |||||||    
T  24072284 tcaagtt 24072278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 17854179 - 17854079
Alignment:
Q  44 ggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagt 143  Q
    |||||||||||||| |||||||||| |||  || | || |||||| || |||| |||  |||||||| ||||||| |||||||| || ||||| ||||||    
T  17854179 ggtggaccgggggtgaggggtgcccttctaatttggtcttgaagtatggtgggccgaccgcttttgactcgagatcgggagtcaattatttggttcaagt 17854080  T
Q  144 t 144  Q
    |    
T  17854079 t 17854079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 34378108 - 34378167
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||| |||| ||||  ||||||||||||||| |||||||||||||||| | ||||||    
T  34378108 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagtt 34378167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 25992017 - 25992090
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||| |||| | || |||||||||||||||| | ||||||||||||| |||| || || ||| ||||||||    
T  25992017 aagtctggtgggccaatcgcttttgattcgagatcgagagtcagttctttagctcgaggttggttttgggcttt 25992090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 18593272 - 18593312
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||| ||||||||| ||||||||    
T  18593272 cttttgattcgagatcgggagttagttctttgactcaagtt 18593312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 15126565 - 15126408
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    |||||||| |||||||||||||||||||||| || | ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||    
T  15126565 ggagttggcgtctagctgcattcttgtttggttgtctttctctggtggaccgggggtaaggggttcccgtctcgttgggtcctgaagtctggtgggccga 15126466  T
Q  101 ttgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |   |||||||||||||| ||||||| ||||||||||||| |||| ||| ||||||||    
T  15126465 tcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggcttt 15126408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 16959959 - 16960064
Alignment:
Q  52 gggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttat 151  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||| |||| |||||||||||||||| | |||||||||||||||||||||||| ||| |    
T  16959959 gggggtaaggggtgcccgtttggtagggtcctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggtttt 16960058  T
Q  152 gggctt 157  Q
    ||||||    
T  16960059 gggctt 16960064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 4471887 - 4472006
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||||||||||||||||||| |||||||||||| | ||||| |||||| |||| |||| || ||||||||||||| ||||||||||||||||      
T  4471887 ttctctggtggaccgggggtaagggg-gcccgtctggtttggtcctggagtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgat 4471985  T
Q  138 tcaagtttagttatgggcttt 158  Q
    ||||||||  || ||||||||    
T  4471986 tcaagtttgtttttgggcttt 4472006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 22885236 - 22885135
Alignment:
Q  52 gggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttat 151  Q
    |||||| ||||||||||| |||||| | |||||||||||| |||| ||||  ||||||||||||||| ||||||||||||||||| |||||||| ||| |    
T  22885236 gggggttaggggtgcccg-ctggtttgatcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggtttt 22885138  T
Q  152 ggg 154  Q
    |||    
T  22885137 ggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 2062901 - 2062972
Alignment:
Q  87 gtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 2062972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 18681035 - 18681148
Alignment:
Q  45 gtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||||||||||  ||||| |||| || | |  |||||| || |||| ||||||| ||||||||||||| ||||||||||||| ||| |||||||    
T  18681035 gtggaccgggggtaaggactgcccttctgatttggttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagttctctggttcaagtt 18681134  T
Q  145 tagttatgggcttt 158  Q
    | ||| ||||||||    
T  18681135 tggttttgggcttt 18681148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 33788708 - 33788643
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  33788708 tcctgaagtctggtgggccgatcgcttttgattcgagattgggagtcagttctttggttcaggttt 33788643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2062827 - 2062907
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctgg-------cattctcaggtggaccgggggtaaggggtgcccgtctggt 75  Q
    |||||||||||||||||||||||||||||||||||       ||||||| |||||||| |||||||||||||||||||||||    
T  2062827 ggagttggtgtctagctgcattcttgtttggctggctacgatcattctctggtggacc-ggggtaaggggtgcccgtctggt 2062907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 29487051 - 29487188
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggca------ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatg 94  Q
    ||||||||||||||||||| ||||||| |||| |||       ||||| ||||||| |||||| |||||||||||||||||| | || ||||||||| |     
T  29487051 ggagttggtgtctagctgctttcttgtctggcgggctcggtgtttctctggtggactgggggttaggggtgcccgtctggtttgatcttgaagtctggt- 29487149  T
Q  95 ggtcgattgcttttgattcgagattgggagtcagttctt 133  Q
    || | || ||||||||||||||||||  |||||||||||    
T  29487150 ggccaatcgcttttgattcgagattgatagtcagttctt 29487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 14566424 - 14566501
Alignment:
Q  53 ggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagtt 130  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| |||| | || |||||||||||| ||||| ||||    
T  14566424 ggggttaggggtgcccgtctggtttggtcctgaagtctgatggggcgatcgattctgattcgagattaggagtaagtt 14566501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 1269467 - 1269562
Alignment:
Q  59 aggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatggg 154  Q
    |||||||||| |||| ||   |||| ||||||| |||| ||||  ||||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  1269467 aggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 27739938 - 27740029
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagt 129  Q
    ||||| ||||||| |||||| |||||||||| ||||| | | |||||||||||| |||| |||| ||||||||||| |||| | ||||||||    
T  27739938 ttctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagt 27740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 31902532 - 31902425
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||||||||||||| ||||||| || |||  || | | |||||||||| |||| | || |||||| ||||||||| ||||||||||||| |||     
T  31902532 ttctctggtggaccgggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctggt 31902433  T
Q  138 tcaagttt 145  Q
    ||||||||    
T  31902432 tcaagttt 31902425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 39338935 - 39338877
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| |||| |||||||||||||||| |||||||||||||||| ||||||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagtt 39338877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 7874301 - 7874360
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||| |||||||||  ||||||||||||||| ||||||||| |||||| ||||||||    
T  7874301 aagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagtt 7874360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 14405208 - 14405267
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||| |||| ||||  ||||||||||||||| ||||||||| |||||||||||||||    
T  14405208 aagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagtt 14405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 16952434 - 16952394
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  16952434 ttttgattcgagatcgggagccagttctttggctcaagttt 16952394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 17023099 - 17023059
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  17023099 ttttgattcgagatcgggagccagttctttggctcaagttt 17023059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 17060405 - 17060365
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  17060405 ttttgattcgagatcgggagccagttctttggctcaagttt 17060365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 17079199 - 17079239
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  17079199 ttttgattcgagatcgggagccagttctttggctcaagttt 17079239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 13337284 - 13337343
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||||| ||||  |||||||||||| || || ||||||||||||| ||||||||    
T  13337284 aagtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagtt 13337343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 7695992 - 7696046
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||||||||| |  |||||||||||||||||||||||||  ||| ||||||||    
T  7695992 cttttgattcgataccgggagtcagttctttggctcaagttaggttttgggcttt 7696046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 10173630 - 10173576
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||| || ||| |||| |||||||||||||| ||| ||||||||    
T  10173630 cttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttt 10173576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 47945631 - 47945789
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggacc-gggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcg 99  Q
    |||||||| ||||||| ||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||| | |||| ||    
T  47945631 ggagttggcgtctagcagcattcttgtttggctaacattctctggtggaccagggggtaaggggtgcccgtctggttgggtcctaaagtccggtgggccg 47945730  T
Q  100 attgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||  ||||||||||||||| ||||||||||| ||||||||||||||  || ||||||||    
T  47945731 atcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggcttt 47945789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 14193909 - 14194010
Alignment:
Q  44 ggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagt 143  Q
    |||| |||||| || |||||||||| |||| || | |||| |||||||  ||  ||||  ||||||||||||||||||||||| ||||||||||||||||    
T  14193909 ggtgtaccgggagtgaggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagt 14194008  T
Q  144 tt 145  Q
    ||    
T  14194009 tt 14194010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 30935508 - 30935388
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| ||||||||||||||||||||||||| |||| || | |  |||||| || ||||  ||| ||||||||||| |||| |||||| |||| |||||     
T  30935508 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtttggtgggctgatcgcttttgattcaagatcgggagttagttatttggt 30935409  T
Q  138 tcaagtttagttatgggcttt 158  Q
    |||||||| ||| || |||||    
T  30935408 tcaagtttggttttgagcttt 30935388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 5556581 - 5556640
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||| |||| |||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  5556581 agtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagttt 5556640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 37123411 - 37123465
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||    
T  37123411 cttttgattcgagattgggagtcagttctttggatcaaatttggttttgggcttt 37123465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 14879421 - 14879505
Alignment:
Q  61 gggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||| |||| |||| |||| ||||||| |||| ||||  ||||||||||||||| ||||||| |||| |||| ||||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttt 14879505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 33144020 - 33143956
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagtt 149  Q
    ||||||| ||| |||||  ||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  33144020 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtt 33143956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 19176512 - 19176571
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||| |||| ||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  19176512 aagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 19176571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 17550968 - 17551026
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 17551026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 9584124 - 9584067
Alignment:
Q  85 aagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaag 142  Q
    ||||||| ||| |||||  ||||||||||||||| |||||||||||||||| ||||||    
T  9584124 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaag 9584067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 25594638 - 25594534
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| || |||||||||||| ||||||||| |||  || | |||| ||||||| ||||| ||| ||||||||||| |||| || ||| | ||||||||     
T  25594638 ttctctggcggaccgggggtatggggtgcccttctattttggtcctcaagtctggtgggtagatcgcttttgattctagatcggaagttaattctttggt 25594539  T
Q  138 tcaag 142  Q
    |||||    
T  25594538 tcaag 25594534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 43012404 - 43012444
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  43012404 cttttgattcgagatcgggagtcagttctttgactcaagtt 43012444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 25647647 - 25647754
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| |||||| || | |||||||| |||| || | |||| |||||||| ||| | ||  ||||||||||||||| ||||||  ||||||||||    
T  25647647 ttctctggtgtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggc 25647746  T
Q  138 tcaagttt 145  Q
    | ||||||    
T  25647747 ttaagttt 25647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 1652938 - 1652884
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||||||||||||  ||||| |||||||||| |||||||| ||| ||||||||    
T  1652938 cttttgattcgagatcaggagttagttctttggttcaagtttggttttgggcttt 1652884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 39021328 - 39021274
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||| | ||||||||||||||||| |||||| | ||| ||||||||    
T  39021328 cttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggcttt 39021274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 2392558 - 2392518
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  2392558 cttttgattcgagattggaagtcagttctttgtcttaagtt 2392518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 2394305 - 2394265
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  2394305 cttttgattcgagattggaagtcagttctttgtcttaagtt 2394265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 30127285 - 30127333
Alignment:
Q  98 cgattgcttttgattcgagattgggagtcagttct-ttggctcaagttt 145  Q
    |||| |||||||||||||||| ||||||||||||| ||| |||||||||    
T  30127285 cgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttt 30127333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 6485 - 6641
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    ||||||||||||||||||||||||||| ||| ||||||| || |||||||| | |||||||||||||| ||||||||  |||||||||||| ||   |||    
T  6485 ggagttggtgtctagctgcattcttgtctggatggcattatctggtggacc-gaggtaaggggtgcccatctggttgagtcctgaagtctggtgcaacga 6583  T
Q  101 ttgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |  |||||||||| ||||||| ||| ||||||||||||||||||| ||| | ||||||    
T  6584 tctcttttgattcaagattggtagttagttctttggctcaagtttggtttttggcttt 6641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 30236246 - 30236126
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| ||||||||||||||||||||||||| |||| || | |  ||||||||| |||| |||| |||||||||||||||| |||||||||||||||||     
T  30236246 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttggt 30236147  T
Q  138 tcaagtttagttatgggcttt 158  Q
    |||||||| ||| ||||||||    
T  30236146 tcaagtttggttttgggcttt 30236126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 15906649 - 15906767
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| ||||||| |||||| | |||||||||| ||||| | |||||||||||| |||| ||||  | ||||||||||||| |||||||||||||||||     
T  15906649 ttctcgggtggactgggggttaagggtgcccgtttggtttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggt 15906748  T
Q  138 tcaagtttagttatgggct 156  Q
    |||||||| ||| ||||||    
T  15906749 tcaagtttggttttgggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 17720865 - 17720721
Alignment:
Q  2 gagttggtgtctagctgcattcttgtttggctggca------ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgg 95  Q
    ||||||| || ||||||||||||||||||||||||       | ||| |||||||| ||||||||||||||| |||||||| | |||| |||| || |||    
T  17720865 gagttggcgtatagctgcattcttgtttggctggctccgtgttcctctggtggaccaggggtaaggggtgcctgtctggtttggtcctaaagtatggtgg 17720766  T
Q  96 gtcgattgcttttgattcgagattgggagtcagttctttggctcaa 141  Q
    |  ||| |||||||||||| ||| ||||||||||||||||| ||||    
T  17720765 gctgatcgcttttgattcg-gatcgggagtcagttctttggttcaa 17720721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 17657065 - 17657000
Alignment:
Q  93 tgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||    
T  17657065 tgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggacttt 17657000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 41791327 - 41791262
Alignment:
Q  93 tgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||| |||||||||||||||| | |||||| |||||||| |||||||||||| ||| ||||    
T  41791327 tgggtcgatcgcttttgattcgagatcgagagtcacttctttggttcaagtttagttttggacttt 41791262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 10552232 - 10552351
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| ||| |||| |||| ||||||||||| |||| || | | |||||||||| |||| |||| ||||||||||| |||| ||||||||||||| |||     
T  10552232 ttctctggtagaccaggggcaaggggtgccc-tctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttctctggt 10552330  T
Q  138 tcaagtttagttatgggcttt 158  Q
    || ||||| ||| || |||||    
T  10552331 tctagtttggttttgtgcttt 10552351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 24995465 - 24995407
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  24995465 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 24995407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 31207432 - 31207374
Alignment:
Q  86 agtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||| |||| ||||  ||||||||||||||| |||||||||||||||| ||||||||    
T  31207432 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtt 31207374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 10248605 - 10248564
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  10248605 cttttgattcaagatcgggagtcagttctttggctcaagttt 10248564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 16457513 - 16457473
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  16457513 cttttgattcgagatcgggagtcagttctttgactcaagtt 16457473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 35062436 - 35062540
Alignment:
Q  54 gggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgg 153  Q
    ||||||||||||||  |||| || | | |||||||||| |||| |||| | |||||||||||||| | ||||||||||| | | || ||||| ||| |||    
T  35062436 gggtaaggggtgcctctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgagagtcagttctcttgttctagtttggttttgg 35062535  T
Q  154 gcttt 158  Q
    |||||    
T  35062536 gcttt 35062540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 41893452 - 41893412
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  41893452 cttttgattcgagatcgggagtcagttctttgtctcaagtt 41893412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 9519529 - 9519568
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  9519529 ttttgattcgagatcgggagtcagttctttgactcaagtt 9519568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 37986909 - 37986870
Alignment:
Q  105 ttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  37986909 ttttgattcgagatcgggagtcagttctttgactcaagtt 37986870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 32945755 - 32945701
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||| |||||||| |||||||  |||||||| ||| ||||||||    
T  32945755 cttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggcttt 32945701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 12198108 - 12198067
Alignment:
Q  117 attgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||||||||||||||||| ||| || |||||    
T  12198108 attgggagtcagttctttggctcaagtttggttttgagcttt 12198067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 12442536 - 12442495
Alignment:
Q  117 attgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||||||||||||||||| ||| || |||||    
T  12442536 attgggagtcagttctttggctcaagtttggttttgagcttt 12442495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 13098725 - 13098569
Alignment:
Q  1 ggagttggtgtctagctgcattcttgtttggctggcattctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcga 100  Q
    |||||||| |||||||||||||||||| ||| ||| |||||  |||||||||||| |||||||||||| ||||||||  |||||||||||  ||   |||    
T  13098725 ggagttggcgtctagctgcattcttgtctggatggtattctttggtggaccgggg-taaggggtgcccatctggttgagtcctgaagtctagtgcaacga 13098627  T
Q  101 ttgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |  ||| |||||| ||||||||||| ||||||||||||||||||| ||| | ||||||    
T  13098626 tctcttctgattcaagattgggagttagttctttggctcaagtttggtttttggcttt 13098569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 32935449 - 32935350
Alignment:
Q  46 tggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||| ||||||| |||||| ||| |||| || | |||||||||||| |||| |||| |||||||||||||||| |||||||||||||| | |||||||||    
T  32935449 tggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagttt 32935350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 26534795 - 26534714
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagt---tctttggctcaagtttagttatgggcttt 158  Q
    |||||||||||| |||| ||||  ||||||||||||||||||||||||||   ||||||| |||||||| ||| ||||||||    
T  26534795 tcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttcttctttggttcaagtttggttttgggcttt 26534714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 13423495 - 13423549
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    ||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||    
T  13423495 cttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggcttt 13423549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 20701921 - 20701801
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| ||||||||| |||||||||| |||| || | || |  || ||| || | ||||  ||||||||||||||| |||||| |||||||||||    
T  20701921 ttctctggtgtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggc 20701822  T
Q  138 tcaagtttagttatgggcttt 158  Q
    | |||||| ||| ||||||||    
T  20701821 ttaagtttggttttgggcttt 20701801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 33968676 - 33968624
Alignment:
Q  93 tgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  33968676 tgggtagatcgcttttgattcgagatcgggagtcagttctttggttcaagttt 33968624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 9224046 - 9224124
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||| ||||||| ||||  ||| |||||||||||||||| ||||||||||||||||| |||  ||| ||| ||||||||    
T  9224046 tcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttggttcagttttggttttgggcttt 9224124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 26216128 - 26216017
Alignment:
Q  46 tggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    |||||||| |||||| ||||||| |||| || | | || ||||||| |||| ||||  ||||||||||||||| |||||||||||||| || |||  |||    
T  26216128 tggaccggaggtaagaggtgcccttctgatttgattct-aagtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagtttt 26216030  T
Q  146 agttatgggcttt 158  Q
     ||| ||||||||    
T  26216029 ggttttgggcttt 26216017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 21264991 - 21265070
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggctttg 159  Q
    |||||||| ||  |||| |||| |||||||||||||||| |||||| |||| | ||| |||||||| ||| |||||||||    
T  21264991 tcctgaagactagtgggccgatagcttttgattcgagatcgggagttagttatctggttcaagtttggttttgggctttg 21265070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 21266118 - 21266197
Alignment:
Q  80 tcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggctttg 159  Q
    |||| ||| ||| |||| |||| |||||||||||||||| |||||| |||| | ||| |||||||| ||| |||||||||    
T  21266118 tcctaaagactggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggctttg 21266197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 3117522 - 3117562
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    |||||||||| |||| |||||||||||||||| ||||||||    
T  3117522 cttttgattcaagatcgggagtcagttctttgactcaagtt 3117562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 16510353 - 16510313
Alignment:
Q  104 cttttgattcgagattgggagtcagttctttggctcaagtt 144  Q
    ||||||||||||||||| |||||||||||||  ||||||||    
T  16510353 cttttgattcgagattgagagtcagttcttttactcaagtt 16510313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 19367 - 19466
Alignment:
Q  59 aggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatgggcttt 158  Q
    |||||||||| |||| || | |||| ||||||| |||| ||||  ||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||    
T  19367 aggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggcttt 19466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 42235 - 42140
Alignment:
Q  59 aggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagtttagttatggg 154  Q
    |||||||||| |||| ||   |||| ||||||| |||| ||||  ||||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  42235 aggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 1090 - 1028
Alignment:
Q  83 tgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggctcaagttt 145  Q
    ||||||||| |||| |||| |||||||||||||||| ||||||||||||||||| | ||||||    
T  1090 tgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttt 1028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 36670 - 36773
Alignment:
Q  38 ttctcaggtggaccgggggtaaggggtgcccgtctggttggttcctgaagtctgatgggtcgattgcttttgattcgagattgggagtcagttctttggc 137  Q
    ||||| |||| |||| | || |||||||||| |||| || | |||| |||||||  |||  |||  ||||||||||||||| |||||||||||||||| |    
T  36670 ttctctggtgtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtc 36769  T
Q  138 tcaa 141  Q
    ||||    
T  36770 tcaa 36773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1289 times since January 2019
Visitors: 6138