View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0849_high_4 (Length: 560)
Name: NF0849_high_4
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 41 - 425
Target Start/End: Complemental strand, 29122892 - 29122508
Alignment:
| Q |
41 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttcataataaaatga |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29122892 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttcatgataaaatga |
29122793 |
T |
|
| Q |
141 |
tgatgtgacattttaaatgacgttttagagannnnnnnnnattaaaacttcatggatatcaatcattcaacatccttgtatgcatatgtcacatcattta |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29122792 |
tgatgtgacattttaaatgacgttttagagatttttttttgttaaaacttcatggatatcaatcattcaacattcttgtatgcatatgtcacatcattta |
29122693 |
T |
|
| Q |
241 |
taatatgtggtatcactaatttttagttnnnnnnnttcgaaggaggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaa |
340 |
Q |
| |
|
||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
29122692 |
taatatgcggcatcactaatttttagttaaaaaaatccgaaggaggaccaaaactattaaattttaaaatacagggactaattctacaaattggtgaaaa |
29122593 |
T |
|
| Q |
341 |
tagagtgatcagatgagtaactaattcttaaattttttaaaataatttttagtggattgataatgaattgttttatccacccatt |
425 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
29122592 |
tagagtgatcagatcagtaactaattcttaaattttttaaaacaatttttagtggatcgataatggattgttttatccacccatt |
29122508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 38196067 - 38196154
Alignment:
| Q |
41 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38196067 |
gaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc |
38196154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 6216275 - 6216217
Alignment:
| Q |
285 |
ggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaatag |
343 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||| |||| |||||||||||| |
|
|
| T |
6216275 |
ggaccaaaactatcgaattttaaaatagggggaccaattctgcaaagtggtgaaaatag |
6216217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 3577779 - 3577836
Alignment:
| Q |
288 |
ccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaatagag |
345 |
Q |
| |
|
|||||||| | ||||||||||||| ||||| |||||| |||| |||||||||||||| |
|
|
| T |
3577779 |
ccaaaactgtcaaattttaaaatagggggaccaattcttcaaaatggtgaaaatagag |
3577836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 42552603 - 42552558
Alignment:
| Q |
300 |
aattttaaaatacggggattaattctacaaattggtgaaaatagag |
345 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
42552603 |
aattttaaaatacagggaccaattctacaaaatggtgaaaatagag |
42552558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 15061528 - 15061471
Alignment:
| Q |
285 |
ggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaata |
342 |
Q |
| |
|
||||||||||| | ||||||||||||| | |||| ||||||||||| || |||||||| |
|
|
| T |
15061528 |
ggaccaaaactgtcaaattttaaaataggaggatcaattctacaaaatgatgaaaata |
15061471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 6198103 - 6198147
Alignment:
| Q |
300 |
aattttaaaatacggggattaattctacaaattggtgaaaataga |
344 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
6198103 |
aattttaaaatagggggaccaattctacaaaatggtgaaaataga |
6198147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 864 times since January 2019
Visitors: 6134