View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_high_8 (Length: 402)
Name: NF0849_high_8
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 29 - 390
Target Start/End: Complemental strand, 34609998 - 34609640
Alignment:
| Q |
29 |
agacagcagctaagcgggaagagtcgagaggggtacaacaagaagaagacggtgatgacgtcgtcttttgcgaagctgaggccattgcaaaggattcgct |
128 |
Q |
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| T |
34609998 |
agacagcagctaagcgggaagagtcgagaggggtacaacaagaagaagacggtgatgacgtcgtcttttgcgaagctgaggccattgcaaaggattcgct |
34609899 |
T |
|
| Q |
129 |
atttcgccgattccagcaccacaataggtatcaagacagtacactgacatgcaggtacggcgactcactttctttttcttccgatcttccaccgcgcaac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34609898 |
atttcgccgattccagcaccacaataggtatcaagacagtacactgacatgcaggtacggcgactcaccttctttttcttccgatcttccaccgcgcaac |
34609799 |
T |
|
| Q |
229 |
cgtcgtcgtcgtgaaatctgcaacaccactgtaacaaaagaaatttctagaataaagaagatgaagcaaagtttaaagacgataaagagagagactcttc |
328 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34609798 |
cgtcgtcgtcgtgaaatctgtaacaccactgaaacaaaagaaatttctagaataaagaagatgaagcaaagtttaaagacgataaagagagagactcttc |
34609699 |
T |
|
| Q |
329 |
actccacatttatagaaaaaatgaagtcacgtgtgtgagtgttcttttttccttccttttca |
390 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34609698 |
actccacatttataga-aaaatgaagtcac--gtgtgagtgttcttttttccttccttttca |
34609640 |
T |
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