View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_low_12 (Length: 389)
Name: NF0849_low_12
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_12 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 97 - 389
Target Start/End: Complemental strand, 28529039 - 28528747
Alignment:
| Q |
97 |
aaaacttggtcggtgctctatattgttgtttttatcaaaatcgtggttccatattggattatgtcaaactcaccgtcaatcctcacaagtatgaagtgaa |
196 |
Q |
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| T |
28529039 |
aaaacttggtcggtgctctatattgtcgtttttatcaaaatcgtggttccatactggattatgtcaaactcaccgtcaatcctcacaagtatgaagtgaa |
28528940 |
T |
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| Q |
197 |
cttcaaaatgtagaaggaagtgcttcctaaaattaagtaaaaataatggtatatagtacatattttaggaagaaacataccttgggattaaattcatttg |
296 |
Q |
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| T |
28528939 |
cttcaaaatgtagaaggaaatgcttcctaaaattaagtaaaaataatggtatatagtacatattttaggaagaaacataccttgggattaaattcatttg |
28528840 |
T |
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| Q |
297 |
aatattttggatttgtgtgttgagaagccttgaagtaagtaggacaagtagtacaataaggatcatcacacattcctaatagcccagatttct |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28528839 |
aatattttggatttgtgtgttgagaagccttgaagtaagtaggacaagtagtacaataaggatcatcacacattcctaatagcccagatttct |
28528747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 27892267 - 27892209
Alignment:
| Q |
314 |
tgttgagaagccttgaagtaagtaggacaagtagtacaataaggatcatcacacattcc |
372 |
Q |
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| T |
27892267 |
tgttgagtagccttgaagtaagttggacaagtagtacagtaaggatcattacacattcc |
27892209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 28055802 - 28055688
Alignment:
| Q |
260 |
tttaggaagaaacataccttgggattaaattcatttgaatattttggatttgtgtgttgagaagccttgaagtaagtaggacaagtagtacaataaggat |
359 |
Q |
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|||||||||||| |||||||| ||| |||| ||| ||| | |||| ||| | || |||||| | |||||||| ||||| ||||||||||||||||||| |
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| T |
28055802 |
tttaggaagaaagataccttgtgatcaaatatattggaagctcttggttttctttgctgagaaactttgaagtacgtagggcaagtagtacaataaggat |
28055703 |
T |
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| Q |
360 |
catcacacattccta |
374 |
Q |
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| T |
28055702 |
catgacacattccta |
28055688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 28086437 - 28086323
Alignment:
| Q |
260 |
tttaggaagaaacataccttgggattaaattcatttgaatattttggatttgtgtgttgagaagccttgaagtaagtaggacaagtagtacaataaggat |
359 |
Q |
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|||||||||||| |||||||||||| |||| | | ||| | |||| ||| | || |||| | | |||||||||||||| ||||||||||||||||||| |
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| T |
28086437 |
tttaggaagaaagataccttgggatcaaatatagtggaagctcttggttttctttgctgagcaactttgaagtaagtagggcaagtagtacaataaggat |
28086338 |
T |
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| Q |
360 |
catcacacattccta |
374 |
Q |
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| T |
28086337 |
cattacacattccta |
28086323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 1435077 - 1434963
Alignment:
| Q |
260 |
tttaggaagaaacataccttgggattaaattcatttgaatattttggatttgtgtgttgagaagccttgaagtaagtaggacaagtagtacaataaggat |
359 |
Q |
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|||||||||||| |||||||||||| |||| | | ||| | |||| ||| | || |||| | | |||||| ||||||| ||||||||||||||||||| |
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| T |
1435077 |
tttaggaagaaagataccttgggatcaaatatagtggaagctcttggttttttttggtgagcaactttgaaggaagtagggcaagtagtacaataaggat |
1434978 |
T |
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| Q |
360 |
catcacacattccta |
374 |
Q |
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| T |
1434977 |
cattacacattccta |
1434963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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