View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_low_14 (Length: 385)
Name: NF0849_low_14
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 80 - 356
Target Start/End: Complemental strand, 16809110 - 16808833
Alignment:
| Q |
80 |
atgaatggtgcattaaataatataaacatggagaacaaaatccttcatatccaaatgtcaaaataatgaaggagtaatatttatctattg--gaattgca |
177 |
Q |
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| T |
16809110 |
atgaatggtgcattaaataatataaacatggagaacaaaatccttcatatccaaatgtcaaaataatgaaggagtaatatttatctattgtggaattgca |
16809011 |
T |
|
| Q |
178 |
aagtgtttaataaccagaaatttgatattctgagcctaaccttatctcttttgacaaagcatttttaaccaatccaatgcatgccacattatggacagat |
277 |
Q |
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| T |
16809010 |
aagtgtttaataaccagaaatttgatattctgagcctaaccttatctcttttgacaaagcatttt-aaccaatccaatgcatgccacattatggacagat |
16808912 |
T |
|
| Q |
278 |
tgaaatacaagccattagttctccataatagagacaattaaaagtaaatgctaagcagaaagaacaggtatattaatac |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16808911 |
tgaaatacaagccattagttctccataatagagacaattaaaagtaaatgctaagcagaaagaacatgtatattaatac |
16808833 |
T |
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