View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_low_17 (Length: 347)
Name: NF0849_low_17
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 11858843 - 11859139
Alignment:
| Q |
1 |
gtatcaccgactcatcaaaatcgcttatcaaaacgggcttaaacataataaatcgttaccaattcaagaaagccattgttcaagtcaacaaagccaccga |
100 |
Q |
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| T |
11858843 |
gtatcaccgactcatcaaaatcgcttatcaaaacaggcttaaacattataaatcgttaccaattcaagaaagccattgtccaagtcaacaaagccactga |
11858942 |
T |
|
| Q |
101 |
ggaactcgaactgctgctgaaggaagaaaaaacagttattagtaatactaatgagaaaagaaagttggcatacacagattttgagaaaagtactgagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11858943 |
ggaactcgaactgctgctgaaggaagaaaaaacagttattagtaatactaatgagaaaagaaagttggcatacaaagattttgagaaaagtactgagcat |
11859042 |
T |
|
| Q |
201 |
gtagctgttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11859043 |
gtagctgttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattg |
11859139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 297
Target Start/End: Original strand, 12037773 - 12037937
Alignment:
| Q |
133 |
cagttattagtaatactaatgagaaaagaaagttggcatacacagattttgagaaaagtactgagcatgtagctgttggcagagaaagagagaagaagga |
232 |
Q |
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|||||||||||||||||| |||||||||||||| |||| ||| |||||||||| ||| |||||||||||||||| ||||||| |||||| | || |
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| T |
12037773 |
cagttattagtaatactactgagaaaagaaagtctgcatgtgaagactttgagaaaaataccaagcatgtagctgttggaagagaaaatgagaaggaaga |
12037872 |
T |
|
| Q |
233 |
gattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattg |
297 |
Q |
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| T |
12037873 |
gcttatagataaactggtgaacctgaagaacactgatgctgctgttcctgttgttattgttattg |
12037937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 11903466 - 11903411
Alignment:
| Q |
207 |
gttggcagagaaagagagaagaaggagattatagataaactgctgaagatgaacaa |
262 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |||| |||||| ||||||| |
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| T |
11903466 |
gttggcagagaaaatgaaaagaaggagattatagatcaactactgaagttgaacaa |
11903411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 11826868 - 11826921
Alignment:
| Q |
200 |
tgtagctgttggcagagaaagagagaagaaggagattatagataaactgctgaa |
253 |
Q |
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|||||||||||| ||||||| |||||||| || ||||||||| |||||||||| |
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|
| T |
11826868 |
tgtagctgttggaagagaaaatgagaagaaagaaattatagatcaactgctgaa |
11826921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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