View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_low_20 (Length: 331)
Name: NF0849_low_20
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 46123271 - 46122979
Alignment:
| Q |
30 |
ctcttggctattattattttccaataatacacatgtttttggtatcttaacataccatagactagttagttcttttactccctccatctcatttaatttc |
129 |
Q |
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| T |
46123271 |
ctcttggctattattattttccaataatacacaagtttttggtatcttaacatatcatagactagttagttcttttactccctccatctcatttaatttc |
46123172 |
T |
|
| Q |
130 |
aagtttagaataattcgtttgtgtcatattatctgccattttaaattactaatggagcattaattactcttttttcaccaatatgtcaatttataacatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46123171 |
aagtttagaataattcgtttgtgtcatattatctgccattttaaattactaatggagcattaattactcttttttcaccaatatgtcaatttattacatc |
46123072 |
T |
|
| Q |
230 |
acaattcaactaacaactatatatattaaaaagagtaatttagtaagtaaaactaattttataatagaaattagtatagtgaatgatattgtt |
322 |
Q |
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| T |
46123071 |
acaattcacctaacaactatatatattaaaaagagtaatttagtaagtaaaactaattttataatagaaattagtatagtgaatgattttgtt |
46122979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 46129248 - 46129065
Alignment:
| Q |
45 |
attttccaataataca-catgtttttggtatcttaacataccatagactagttagttcttttactccctccatct--catttaatt-tcaagtttagaat |
140 |
Q |
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||||||||| |||||| || |||||||||||||||||| ||| || || ||||||||| ||||| ||| ||| ||||||| | |||||||||| || |
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| T |
46129248 |
attttccaacaatacaacaaatttttggtatcttaacat--catggaataattagttcttctactctatccttctaacatttaagtgtcaagtttagcat |
46129151 |
T |
|
| Q |
141 |
aattcgtttgtgtcatattatctgccattttaaattactaatggagcattaattactct--tttttcaccaatatgtcaatttata |
224 |
Q |
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| T |
46129150 |
atttcgttagagtcatattattaaccattttcaattactaatggagtattaattgcccttctttttcactaatatctccatttata |
46129065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 43870882 - 43870836
Alignment:
| Q |
253 |
tattaaaaagagtaatttagtaagtaaaactaattttataatagaaa |
299 |
Q |
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|||||||||||||| |||||||| | ||||||||||||| ||||||| |
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| T |
43870882 |
tattaaaaagagtactttagtaaatgaaactaattttatcatagaaa |
43870836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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