View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0849_low_21 (Length: 330)
Name: NF0849_low_21
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23468982 - 23469206
Alignment:
| Q |
1 |
aatcccaaaaaactggatatactcaataaataaagtcaagttttcatcaccttttggatgccatgtgaacgatttattgctgctcacatcgcatcttagc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
23468982 |
aatcccaacaaactggatatactcaata----aagtcaagttttcatcaccttttggatgccatgtgaacaatttatagctgctcacatcgcatcttagc |
23469077 |
T |
|
| Q |
101 |
aaaaatatattgccaacagagtggttttgcttcattccatttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgcag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23469078 |
aaaaatatattgccaacaatatggttttgcttcattacatttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgcag |
23469177 |
T |
|
| Q |
201 |
ttgtgttatgtttgaatgctagaaataat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23469178 |
ttgtgttatgtttgaatgctagaaataat |
23469206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 13291875 - 13291942
Alignment:
| Q |
139 |
atttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgcagttgtgt |
206 |
Q |
| |
|
||||| || |||||||||||| || ||||||| ||| | ||||||||| |||||||||||| |||||| |
|
|
| T |
13291875 |
atttgcctccttgattaagtgcaagttatcaatgaggggtgactttataatctggcttgcaattgtgt |
13291942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2707 times since January 2019
Visitors: 6167