View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0849_low_27 (Length: 308)

Name: NF0849_low_27
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0849_low_27
NF0849_low_27
[»] chr7 (13 HSPs)
chr7 (11-308)||(47456744-47457043)
chr7 (82-308)||(48058461-48058675)
chr7 (139-292)||(9107237-9107390)
chr7 (153-250)||(12546272-12546370)
chr7 (11-82)||(48058343-48058414)
chr7 (137-292)||(13311915-13312070)
chr7 (211-292)||(9428030-9428110)
chr7 (139-195)||(33739444-33739501)
chr7 (219-281)||(22568043-22568105)
chr7 (225-287)||(46133214-46133276)
chr7 (225-302)||(38485621-38485698)
chr7 (228-308)||(3478412-3478492)
chr7 (11-67)||(28534175-28534231)
[»] chr4 (7 HSPs)
chr4 (11-308)||(21983545-21983842)
chr4 (62-308)||(38929887-38930133)
chr4 (82-308)||(28966927-28967152)
chr4 (82-305)||(12296238-12296461)
chr4 (82-174)||(46487466-46487557)
chr4 (224-287)||(43374031-43374094)
chr4 (228-302)||(35800555-35800629)
[»] chr2 (19 HSPs)
chr2 (82-308)||(15126205-15126431)
chr2 (82-305)||(22884930-22885151)
chr2 (139-308)||(16960042-16960211)
chr2 (96-282)||(33788441-33788627)
chr2 (200-308)||(2062949-2063055)
chr2 (153-292)||(25504773-25504913)
chr2 (106-282)||(27740061-27740237)
chr2 (82-174)||(2063067-2063155)
chr2 (153-292)||(29487207-29487346)
chr2 (225-302)||(12793669-12793745)
chr2 (82-122)||(15360961-15361001)
chr2 (222-308)||(10173512-10173599)
chr2 (219-292)||(43816388-43816461)
chr2 (209-305)||(4471986-4472081)
chr2 (11-67)||(13337604-13337660)
chr2 (41-73)||(15817075-15817107)
chr2 (241-308)||(16952336-16952404)
chr2 (241-308)||(17023001-17023069)
chr2 (241-308)||(17060307-17060375)
[»] chr6 (10 HSPs)
chr6 (82-308)||(13098366-13098592)
chr6 (82-260)||(16180694-16180875)
chr6 (224-305)||(26534652-26534734)
chr6 (155-258)||(33968482-33968586)
chr6 (224-292)||(9224117-9224186)
chr6 (228-308)||(13423526-13423606)
chr6 (228-292)||(26215960-26216024)
chr6 (83-185)||(15944201-15944299)
chr6 (228-308)||(15120538-15120618)
chr6 (18-75)||(16180534-16180591)
[»] chr1 (9 HSPs)
chr1 (82-306)||(19598698-19598922)
chr1 (139-304)||(50589058-50589224)
chr1 (82-191)||(38548855-38548963)
chr1 (225-302)||(4651845-4651922)
chr1 (154-280)||(17033676-17033803)
chr1 (210-253)||(42374279-42374322)
chr1 (224-292)||(28395026-28395095)
chr1 (232-308)||(34774931-34775007)
chr1 (214-250)||(38544664-38544700)
[»] chr5 (11 HSPs)
chr5 (82-308)||(22675116-22675345)
chr5 (82-308)||(27713129-27713351)
chr5 (153-292)||(8730994-8731134)
chr5 (214-289)||(39184112-39184187)
chr5 (222-279)||(17854001-17854058)
chr5 (210-287)||(24072190-24072267)
chr5 (224-287)||(39024379-39024442)
chr5 (228-308)||(13954175-13954255)
chr5 (225-282)||(31721763-31721820)
chr5 (228-287)||(21402778-21402836)
chr5 (135-171)||(25657983-25658019)
[»] scaffold0499 (1 HSPs)
scaffold0499 (82-308)||(6618-6844)
[»] chr3 (7 HSPs)
chr3 (113-308)||(47945766-47945964)
chr3 (82-255)||(25594327-25594499)
chr3 (224-305)||(1652823-1652904)
chr3 (219-292)||(5556647-5556720)
chr3 (142-193)||(27399137-27399189)
chr3 (128-174)||(36602119-36602165)
chr3 (11-67)||(4171098-4171154)
[»] chr8 (2 HSPs)
chr8 (155-292)||(17720573-17720711)
chr8 (83-253)||(15906802-15906971)
[»] scaffold1613 (1 HSPs)
scaffold1613 (214-250)||(943-979)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 47456744 - 47457043
Alignment:
Q  11 cagagaccggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacaccataaaaaa--ccctacaacatcaccacctaaaaacagacccct 108  Q
    ||||||||||||||| ||||||| |||||||||||||  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  47456744 cagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacaccataaaaaaatccctacatcatcaccacctaaaaacagacccct 47456843  T
Q  109 tcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccctctaaatgaaacactcaagtcgcatcccc 208  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  47456844 tcacgaaaccaccactgaaaaaacaaaatccataaccaccaattgccaccactcaacccaaaataaccccctctaaatgaaacactcgagtcgcatccca 47456943  T
Q  209 taagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 308  Q
    |||  |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47456944 taaactgagtcactattctaaagatcaattagcttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 47457043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 82 - 308
Target Start/End: Original strand, 48058461 - 48058675
Alignment:
Q  82 aacatcaccacctaaaaa--cagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccc 179  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||  ||||||     | ||||||||||||| | ||||||||||||||||||||||||     
T  48058461 aacatcaccacctaaaaaaacagaccccttctcgaaaccaccactaaaaaaa-----tccataaccacccatcgtcactactcaacccaaaataacccc- 48058554  T
Q  180 tctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaaca 279  Q
            ||||||||||| ||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  48058555 --------aaacactcaagccgcgtcccataagttgagccactattctaaagatcaatcagcttccaccacctcacaacctccagaccaccgaaagaaca 48058646  T
Q  280 ccataaaagcccataactaaacttgagcc 308  Q
     |||||||| ||| ||| |||||||||||    
T  48058647 acataaaaggccaaaaccaaacttgagcc 48058675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 9107390 - 9107237
Alignment:
Q  139 cataaccacccattgccactactcaacccaaaataac-cccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaat 237  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| | |  | |||| || |||||||| ||||||||||||| |||      
T  9107390 cataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgagccactattctaaagttcacc 9107292  T
Q  238 caacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    |||| ||||||||||| |||| |||   ||||||||||||||| | |||||||||    
T  9107291 caacatccaccacctctcaacctccttcccaccgaaagaacacaaaaaaagccca 9107237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 12546272 - 12546370
Alignment:
Q  153 gccactactcaacccaaaataac-cccctctaaatgaaacactcaagtcg-catcccctaagttgagtcactattctaaagatcaatcaacttccaccac 250  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||  |||| |||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  12546272 gccactacttatcccaaaataacacccctctaaatgaaacactcc-gtcgtcatcacctaagctgagccactattctaaagatcaatcaacttccaccac 12546370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 48058343 - 48058414
Alignment:
Q  11 cagagaccggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacaccataaaaaaccctaca 82  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||| |||||||||| ||||||||||||||    
T  48058343 cagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaacaccctaaaaaaccctaca 48058414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 292
Target Start/End: Complemental strand, 13312070 - 13311915
Alignment:
Q  137 ttcataaccacccattgccactactcaacccaaaataaccccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaa 236  Q
    |||||| ||| |||| |||||||| || |||||||||| | |||||||||||||||||     | | || |||||| |||| |||||||||||| |||||    
T  13312070 ttcatatccatccatcgccactacacaccccaaaataaacacctctaaatgaaacacttcgtcctcgtcacctaagctgagacactattctaaatatcaa 13311971  T
Q  237 tcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    ||| || |||||||||| |||| ||  | ||| ||||||||| ||| || ||||||    
T  13311970 tcagctcccaccacctctcaacctctagtccatcgaaagaacgccaaaacagccca 13311915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 9428030 - 9428110
Alignment:
Q  211 agttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    ||||||| |||||||| | |||||||| | |||||||||| ||||||| || || ||||||||||||||||| || ||||||    
T  9428030 agttgagccactattccatagatcaat-agcttccaccacttcacaacctctggtccaccgaaagaacaccaaaacagccca 9428110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 33739501 - 33739444
Alignment:
Q  139 cataaccacccattgccactactcaacccaaaa-taaccccctctaaatgaaacactc 195  Q
    ||||||| || || ||||||||||||| ||||| ||||||||||||||||||||||||    
T  33739501 cataacctcctatcgccactactcaactcaaaaataaccccctctaaatgaaacactc 33739444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 22568043 - 22568105
Alignment:
Q  219 cactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc 281  Q
    |||||||||||||||||||||  || ||||||||| |||| | ||| || |||||||||||||    
T  22568043 cactattctaaagatcaatcagttttcaccacctctcaaccttcggtccgccgaaagaacacc 22568105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 46133214 - 46133276
Alignment:
Q  225 tctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa 287  Q
    ||||||||||||||| ||||| ||||| | |||| ||||| |||||||| |||||||| ||||    
T  46133214 tctaaagatcaatcagcttcccccaccacgcaacctccggtccaccgaaggaacaccaaaaaa 46133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 38485698 - 38485621
Alignment:
Q  225 tctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaact 302  Q
    ||||||||||| ||| |||||||||||   |||| ||||| ||| |||| |||||||| ||||||||| ||| |||||    
T  38485698 tctaaagatcattcagcttccaccaccgtgcaacctccggtccatcgaaggaacaccaaaaaagcccaaaaccaaact 38485621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 3478492 - 3478412
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 308  Q
    |||||||| ||| ||||| ||||||| | |  ||||  |||||||||||||||||  |||||||| |||||| ||||||||    
T  3478492 aaagatcattcagcttccgccacctctcgatctccgatccaccgaaagaacaccaacaaagcccaaaactaatcttgagcc 3478412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 28534175 - 28534231
Alignment:
Q  11 cagagaccggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacacc 67  Q
    |||||||||||||  |||| ||| ||||| ||||||| |||||||| ||||||||||    
T  28534175 cagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacc 28534231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 21983545 - 21983842
Alignment:
Q  11 cagagaccggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacaccataaaaaaccc-tacaacatcaccacctaaaaacagacccctt 109  Q
    ||||||||| |||||||||||||  |||||||| ||| | |||||| ||||||||||||||||||||| |||||||||||||| ||||| || ||||| |    
T  21983545 cagagaccgatgaaatagaaaatataaatgaaaagcgccatatataggcggaacaccataaaaaacccctacaacatcaccacttaaaa-caaaccccct 21983643  T
Q  110 cacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccctctaaatgaaacactcaagtcgcatcccct 209  Q
    ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  21983644 cactaaacccccacggaaaaaacaaaatccataaccacccattgccactactcaacccaaaataaccccttttaaatgaaacactccagtcgcatcccct 21983743  T
Q  210 aagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 308  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21983744 aagctgagtcactattctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 21983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 62 - 308
Target Start/End: Complemental strand, 38930133 - 38929887
Alignment:
Q  62 aacaccataaaaaaccctacaacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactact 161  Q
    ||||||||||||| |||||| |||||||||||||  || | ||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||    
T  38930133 aacaccataaaaacccctactacatcaccacctacgaataaaccccttcacgaaaccaccactgaaaaaacaaaattcataaccacacatcgtcactact 38930034  T
Q  162 caacccaaaataaccccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttc 261  Q
    ||||||||||||||||||| | |||||||||||  ||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||    
T  38930033 caacccaaaataaccccctttgaatgaaacacttcagtcgtatcccataagttgagtgactattccaaagatcaatcaacttccaccacctcacaacctc 38929934  T
Q  262 cggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 308  Q
    |||| |||||||||||||||||||||||||| ||  |||||||||||    
T  38929933 cggatcaccgaaagaacaccataaaagcccaaaatcaaacttgagcc 38929887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 28967152 - 28966927
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataacc-ccct 180  Q
    |||||| |||||||||||| || || ||||||||||||||||  |||||||| ||| ||||||||| ||| ||||||||||| |||||||||||| ||||    
T  28967152 aacatcgccacctaaaaac-gaacctttcacgaaaccaccact-aaaaaacataatccataaccactcatcgccactactcagcccaaaataacctccct 28967055  T
Q  181 ctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacac 280  Q
     |||||||||||||| || ||| |||| |||| |||| |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||     
T  28967054 ttaaatgaaacactccagccgcgtcccataagatgagccactattctagagatcaatcagcttccaccacctcacaacctccggaccaccgaaagaacat 28966955  T
Q  281 cataaaagcccataactaaacttgagcc 308  Q
    | |||||||||| ||| |||||||||||    
T  28966954 cctaaaagcccaaaaccaaacttgagcc 28966927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 82 - 305
Target Start/End: Complemental strand, 12296461 - 12296238
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccct 180  Q
    ||||||||||||||||||||||| ||||  |||| | ||||| |||||| | | || ||||||||||||| ||||||||||| ||||||||||| |||||    
T  12296461 aacatcaccacctaaaaacagactcctttccgaagcgaccactgaaaaa-cgatatccataaccacccatcgccactactcatcccaaaataacacccct 12296363  T
Q  181 ctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacac 280  Q
    |||||||||||||||    | |||| ||||||||||| ||||| |||||||| ||| || ||||||||||| |||||| ||||| |||||||||||||||    
T  12296362 ctaaatgaaacactccgtcctcatcacctaagttgagccactactctaaagaacaaccagcttccaccaccacacaacctccggtccaccgaaagaacac 12296263  T
Q  281 cataaaagcccataactaaacttga 305  Q
    || ||||||||| ||  ||||||||    
T  12296262 caaaaaagcccaaaatcaaacttga 12296238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 46487557 - 46487466
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataa 174  Q
    ||||||||| ||||||||||||| |||||| ||| | ||||| | |||||| | ||||||||||||  || ||||||||||| || |||||||    
T  46487557 aacatcacctcctaaaaacagactccttcatgaagcgaccactg-aaaaacgatattcataaccacatatcgccactactcatcctaaaataa 46487466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 43374031 - 43374094
Alignment:
Q  224 ttctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa 287  Q
    |||||||||||||||| ||||||||||| | |||| ||||  |||| |||||||||||| ||||    
T  43374031 ttctaaagatcaatcagcttccaccaccgcgcaacctccgatccactgaaagaacaccaaaaaa 43374094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 35800629 - 35800555
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaact 302  Q
    |||||||| |||  |||||||||| |  ||| ||||| ||||||||||||||||| ||||||||| ||| |||||    
T  35800629 aaagatcattcaggttccaccaccgcgaaacctccggtccaccgaaagaacaccaaaaaagcccaaaaccaaact 35800555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 308
Target Start/End: Original strand, 15126205 - 15126431
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccc-cct 180  Q
    |||||||||||||||||||| || | |||||||||||||| |  |||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||    
T  15126205 aacatcaccacctaaaaacaaactcgttcacgaaaccacccct-aaaaaacaaaatccataaccacccatcgccactacttaacccaaaataaccctcct 15126303  T
Q  181 ctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacac 280  Q
    ||||||||||||||| || |||||||| ||||  ||||||||||||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||    
T  15126304 ctaaatgaaacactccagccgcatcccataagacgagtcactattctaaagatcaataagtttccaccacctcacaacctccggaccaccgaaagaacac 15126403  T
Q  281 cataaaagcccataactaaacttgagcc 308  Q
    |||||||||||| ||| |||| ||||||    
T  15126404 cataaaagcccaaaaccaaacatgagcc 15126431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 305
Target Start/End: Original strand, 22884930 - 22885151
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccct 180  Q
    ||||||||||||||||| ||||| |||||||||||| ||||| || ||| | |||| ||||||| ||| | |||||| ||   ||||||||||| |||||    
T  22884930 aacatcaccacctaaaa-cagactccttcacgaaacgaccactgacaaa-cgaaatccataacc-cccgtcgccactgcttgtcccaaaataacacccct 22885026  T
Q  181 ctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacac 280  Q
    ||||||||||||| |    | |||| |||||   ||| |||||||||| |||||||||||||||||||||||| |||| || || |||||||||||||||    
T  22885027 ctaaatgaaacacaccgtcctcatcacctaaaacgagccactattctatagatcaatcaacttccaccacctctcaacctctggtccaccgaaagaacac 22885126  T
Q  281 cataaaagcccataactaaacttga 305  Q
    || || | |||| ||| ||||||||    
T  22885127 caaaacaacccaaaaccaaacttga 22885151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 308
Target Start/End: Complemental strand, 16960211 - 16960042
Alignment:
Q  139 cataaccacccattgccactactcaacccaaaataaccccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatc 238  Q
    ||||||| | ||| |||||||||||||||||||||||  ||| || | ||| ||||    ||||||| |||| | |||| || ||||| ||||| |||||    
T  16960211 cataacctctcatcgccactactcaacccaaaataacttcctttataagaagcacttcgttcgcatcacctacgctgagccattattccaaagaacaatc 16960112  T
Q  239 aacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 308  Q
    ||||||||||| |||||||| || || ||||||||||||||||| | ||||||| ||| |||||||||||    
T  16960111 aacttccaccagctcacaacctctggtccaccgaaagaacaccaaataagcccaaaaccaaacttgagcc 16960042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 282
Target Start/End: Original strand, 33788441 - 33788627
Alignment:
Q  96 aaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccctctaaatgaaacact 194  Q
    ||||||| | ||| |||||||| ||||| || ||| |||||| ||||||||||  | ||||||||||  ||||||||||| ||||||||||||||||||     
T  33788441 aaaacaggctcctccacgaaacaaccactgacaaa-caaaatccataaccacctgtcgccactactcgtcccaaaataacacccctctaaatgaaacacc 33788539  T
Q  195 caagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacca 282  Q
    |    | |||| |||||| |||| ||||| |||| |||||||||| ||||||||||||| |||| || ||  ||||||||||||||||    
T  33788540 ccgtcctcatcacctaagctgagccactaatctatagatcaatcagcttccaccacctctcaacctctggttcaccgaaagaacacca 33788627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 2063055 - 2062949
Alignment:
Q  200 cgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaa 299  Q
    |||||| |||||| |||| |||||||  ||||||||||||  |||||| |||||||||| || ||  |||||||||||||||| ||||||||| ||| ||    
T  2063055 cgcatcgcctaagctgagccactatt--aaagatcaatcagtttccacaacctcacaacctctggtacaccgaaagaacaccaaaaaagcccaaaaccaa 2062958  T
Q  300 acttgagcc 308  Q
    |||||||||    
T  2062957 acttgagcc 2062949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 25504773 - 25504913
Alignment:
Q  153 gccactactcaacccaaaataac-cccctctaaatgaaacactcaagtcg-catcccctaagttgagtcactattctaaagatcaatcaacttccaccac 250  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||  ||  |||| || |||||||| | |||||||||| |||||| | ||||||||||    
T  25504773 gccactactcatcccaaaataacacccctctaaatgaaaca-tcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttccaccac 25504871  T
Q  251 ctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    |||  ||| | ||| ||| ||||||||||||| |||||||||    
T  25504872 ctctgaaccttcggtccatcgaaagaacaccaaaaaagccca 25504913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 282
Target Start/End: Complemental strand, 27740237 - 27740061
Alignment:
Q  106 ccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccctctaaatgaaacactcaagtcgcat 204  Q
    |||||||||||| ||||| ||| || | | |||||||||||| | | ||||||||||| |||| |||||| ||||||||||||||||||      | ||     
T  27740237 ccttcacgaaactaccactgaagaa-cgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaatgaaacacattgtcctcaa 27740139  T
Q  205 cccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacca 282  Q
      ||||||||||| |||||||| | ||||||||||  |||||||||||| |||| || || |||||||||||||||||    
T  27740138 tgcctaagttgagccactattccatagatcaatcagtttccaccacctctcaacctctggtccaccgaaagaacacca 27740061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 2063155 - 2063067
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataa 174  Q
    |||||||||||||||||||     |||||| ||||| ||||| |||||||| | || ||||||||  ||||||||||||||||||||||||||    
T  2063155 aacatcaccacctaaaaact----ccttcaagaaacgaccactgaaaaaacgatatccataaccatacattgccactactcaacccaaaataa 2063067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 292
Target Start/End: Complemental strand, 29487346 - 29487207
Alignment:
Q  153 gccactactcaacccaaaataaccccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacct 252  Q
    ||||||||||| ||| | |||| |||||||||||||||||| | |  |||| | ||||||  ||| |||||||| |   |||||||| |||||||||||     
T  29487346 gccactactcatccccagataaacccctctaaatgaaacacaccatccgcaactcctaagccgagccactattccatgaatcaatcagcttccaccacca 29487247  T
Q  253 cacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    |||||| || || | |||||||||||| ||||| ||||||    
T  29487246 cacaacctctggtcaaccgaaagaacatcataacagccca 29487207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 12793669 - 12793745
Alignment:
Q  225 tctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaact 302  Q
    ||||||||||| ||| ||||||||||| |||||| ||||| ||| |||| |||||||||||||||||| ||| |||||    
T  12793669 tctaaagatcattcagcttccaccaccgcacaacctccggtcca-cgaaggaacaccataaaagcccaaaaccaaact 12793745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 15361001 - 15360961
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccacca 122  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  15361001 aacatcaccacctaaaaacataccccttcacgaaaccacca 15360961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 10173512 - 10173599
Alignment:
Q  222 tattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc-ataaaagcccataactaaacttgagcc 308  Q
    ||||| |||||||| ||||||||||||||||| | || ||||   ||||||||||||||| | ||||||||| ||| |||||||||||    
T  10173512 tattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaaccaaacttgagcc 10173599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 43816388 - 43816461
Alignment:
Q  219 cactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    ||||||||||||||||||||| | ||||||||||   ||| || || |||||||||||| |||| |||||||||    
T  43816388 cactattctaaagatcaatcagcctccaccacctttaaacctctggtccaccgaaagaataccaaaaaagccca 43816461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 4472081 - 4471986
Alignment:
Q  209 taagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttga 305  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||    || ||||| ||||| |||||||||||  |||||||| ||  ||||||||    
T  4472081 taagttgagccactattctaaagatcaatcagcttctaccacct-ttgacctccggtccaccaaaagaacaccaataaagcccaaaaacaaacttga 4471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 13337660 - 13337604
Alignment:
Q  11 cagagaccggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacacc 67  Q
    ||||||||||||||| ||| ||| ||||  |||||||||||||||| | ||||||||    
T  13337660 cagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacc 13337604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 15817075 - 15817107
Alignment:
Q  41 aaaggcgtcgtatataagcggaacaccataaaa 73  Q
    |||| ||||||||||||||||||||||||||||    
T  15817075 aaagacgtcgtatataagcggaacaccataaaa 15817107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 16952336 - 16952404
Alignment:
Q  241 cttccaccacctcacaacttccggaccaccgaaagaacaccataaaa-gcccataactaaacttgagcc 308  Q
    ||||||||||||| |||| ||||  ||||||||||||||||| |||| | ||| ||| |||||||||||    
T  16952336 cttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagcc 16952404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 17023001 - 17023069
Alignment:
Q  241 cttccaccacctcacaacttccggaccaccgaaagaacaccataaaa-gcccataactaaacttgagcc 308  Q
    ||||||||||||| |||| ||||  ||||||||||||||||| |||| | ||| ||| |||||||||||    
T  17023001 cttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagcc 17023069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 17060307 - 17060375
Alignment:
Q  241 cttccaccacctcacaacttccggaccaccgaaagaacaccataaaa-gcccataactaaacttgagcc 308  Q
    ||||||||||||| |||| ||||  ||||||||||||||||| |||| | ||| ||| |||||||||||    
T  17060307 cttccaccacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagcc 17060375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 82 - 308
Target Start/End: Original strand, 13098366 - 13098592
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccctc 181  Q
    ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||    
T  13098366 aacatcaccacctaaaaacagaccccttcacaaaaccaccattgaaaaaacaaaatccataacaacccatcgccgctactcaacccaaaataaccccctc 13098465  T
Q  182 taaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc 281  Q
    | | |||||||| | || ||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||| ||| |||||||||||||||||     
T  13098466 tcagtgaaacacactagccgcatcccctaagctgagccactattctaaagatcaatcatcttccacctccacacaacctccagaccaccgaaagaacaca 13098565  T
Q  282 ataaaagcccataactaaacttgagcc 308  Q
    | ||||||| | ||| |||||||||||    
T  13098566 aaaaaagccaaaaaccaaacttgagcc 13098592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 260
Target Start/End: Original strand, 16180694 - 16180875
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaat----tcataaccacccattgccactactcaacccaaaataac-c 176  Q
    ||||||||||||||||| |||||||||||| ||||||||| |  ||||||||||||    ||||||| | |||||||||| |||||||||||||||||      
T  16180694 aacatcaccacctaaaa-cagaccccttcaagaaaccacccct-aaaaaacaaaatctattcataactatccattgccaccactcaacccaaaataactt 16180791  T
Q  177 ccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaactt 260  Q
     |||||||| ||||||||| || ||| | |   ||  ||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  16180792 tcctctaaacgaaacactccagacgcgttctaaaaactgagtcattattttaaagatcaatcagcttccaccacctcacaactt 16180875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 26534652 - 26534734
Alignment:
Q  224 ttctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc-ataaaagcccataactaaacttga 305  Q
    |||||||||||||||| ||||||||||| |||||| | ||| |||||||||||||||| | ||||||||| ||| ||||||||    
T  26534652 ttctaaagatcaatcagcttccaccaccgcacaaccttcggtccaccgaaagaacacctaaaaaagcccaaaaccaaacttga 26534734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 33968482 - 33968586
Alignment:
Q  155 cactactcaacccaaaataac-cccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctc 253  Q
    ||||||||| ||||||||||| |||||||||||||||||||     |  ||| || |||||||| ||||||||||||||||||||| ||||||||| |||    
T  33968482 cactactcatcccaaaataacacccctctaaatgaaacactttgtccttatcgccaaagttgagccactattctaaagatcaatcagcttccaccatctc 33968581  T
Q  254 acaac 258  Q
     ||||    
T  33968582 tcaac 33968586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 9224186 - 9224117
Alignment:
Q  224 ttctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc-ataaaagccca 292  Q
    |||||||||||| ||| ||||||||||| |||||| |||||  |||||||||| |||| |||||||||||    
T  9224186 ttctaaagatcattcagcttccaccaccgcacaacctccggtgcaccgaaagagcaccaataaaagccca 9224117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 13423606 - 13423526
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccata-aaagcccataactaaacttgagcc 308  Q
    |||||||||||| ||||||||||||| |  | ||||| ||| |||||||| |||||| |||||||||||| |||||||||||    
T  13423606 aaagatcaatcagcttccaccacctcgcggcctccggtccatcgaaagaa-accatataaagcccataaccaaacttgagcc 13423526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 26215960 - 26216024
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    |||||||||||| ||||||||||| | |||  ||||| ||||| ||||||||||| |||||||||    
T  26215960 aaagatcaatcagcttccaccaccgcgcaatctccggtccaccaaaagaacaccaaaaaagccca 26216024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 15944299 - 15944201
Alignment:
Q  83 acatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccctct 182  Q
    |||||||||||||||| ||||| |||| ||||||| || ||  |||||||| ||| |||||  || |||||||||||| |||||||||||||| || |||    
T  15944299 acatcaccacctaaaa-cagactcctttacgaaacaactact-aaaaaacagaatccataa--actcattgccactacacaacccaaaataacaccttct 15944204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 15120538 - 15120618
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa-gcccataactaaacttgagcc 308  Q
    ||||||||| || ||||||||||||| | || ||||  ||||| |||||| ||||||||| ||||| |||||||||||||||    
T  15120538 aaagatcaaccagcttccaccacctctcgacctccgatccaccaaaagaa-accataaaaagcccaaaactaaacttgagcc 15120618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16180534 - 16180591
Alignment:
Q  18 cggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacaccataaaaaa 75  Q
    |||||||| ||| ||| |||||||||| |  |||||||||||||||||||| ||||||    
T  16180534 cggtgaaacagataatacaaatgaaagacaccgtatataagcggaacaccaaaaaaaa 16180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 82 - 306
Target Start/End: Complemental strand, 19598922 - 19598698
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccc-t 180  Q
    |||||||||||||||||| |||  ||||||||||||||||||  |||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |    
T  19598922 aacatcaccacctaaaaatagattccttcacgaaaccaccact-aaaaaacaaaatccataaccatccatcgccactactcaacccaaaataacccccct 19598824  T
Q  181 ctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacac 280  Q
    ||||| ||||||||| || || ||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19598823 ctaaaagaaacactctagccgtatcccataagttgagccgttattctaaagatcaatcaacttccaccacctcacaacctccggaccaccgaaagaacac 19598724  T
Q  281 cataaaagcccataactaaacttgag 306  Q
    ||||||| |||| ||  |||||||||    
T  19598723 cataaaaacccaaaatcaaacttgag 19598698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 50589058 - 50589224
Alignment:
Q  139 cataaccacccattgccactactcaacccaaaa-taaccccctctaaatgaaacactcaagtc-gcatcccctaagttgagtcactattctaaagatcaa 236  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||| |||||||||||  ||||||| |||||||||    
T  50589058 cataacctcccattgccactactcaacccaaaaataaccccctctaaatgaaacactcc-gtctgcatcacctaagttgagctactattccaaagatcaa 50589156  T
Q  237 tcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttg 304  Q
    |||||||| ||||||||||||| || || ||||||||||||||| | | ||||||| ||| |||||||    
T  50589157 tcaacttctaccacctcacaacctctggtccaccgaaagaacactaaataagcccaaaaccaaacttg 50589224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 38548855 - 38548963
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccct 180  Q
    ||||||||||||||||| ||||| | |||||||||| | ||| |||||| | | |||||||||||||||| | ||||||||| |||||| |||| |||||    
T  38548855 aacatcaccacctaaaa-cagactctttcacgaaacgatcactgaaaaa-cgatattcataaccacccatcgtcactactcatcccaaagtaacacccct 38548952  T
Q  181 ctaaatgaaac 191  Q
    |||||| ||||    
T  38548953 ctaaatcaaac 38548963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 4651922 - 4651845
Alignment:
Q  225 tctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaact 302  Q
    ||||||||||| ||| ||||||||||| | |||| ||||| |||||||| |||||||| ||||||||| ||| |||||    
T  4651922 tctaaagatcattcagcttccaccaccgcgcaacctccggtccaccgaaggaacaccaaaaaagcccaaaaccaaact 4651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 17033803 - 17033676
Alignment:
Q  154 ccactactcaacccaaaataac-cccctctaaatgaaacactcaagtcg-catcccctaagttgagtcactattctaaagatcaatcaacttccaccacc 251  Q
    |||||||| | ||||||||||| ||||||| |||||||||| || |||  |||| || |||||||| || |||||||||||||||||| ||| || ||||    
T  17033803 ccactactaatcccaaaataacacccctctgaatgaaacac-catgtcctcatcaccaaagttgagccattattctaaagatcaatcagcttgcatcacc 17033705  T
Q  252 tcacaacttccggaccaccgaaagaacac 280  Q
    ||| ||| || ||| | ||||||||||||    
T  17033704 tcataacctcaggatcgccgaaagaacac 17033676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 42374322 - 42374279
Alignment:
Q  210 aagttgagtcactattctaaagatcaatcaacttccaccacctc 253  Q
    |||||||| ||||||||||||||||||||| |||||||||||||    
T  42374322 aagttgagccactattctaaagatcaatcagcttccaccacctc 42374279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 28395026 - 28395095
Alignment:
Q  224 ttctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc-ataaaagccca 292  Q
    |||||||||||| ||| ||||||||| | |||||| ||||| ||||| ||||| |||| |||||||||||    
T  28395026 ttctaaagatcattcaccttccaccaacccacaacctccggtccaccaaaagagcaccaataaaagccca 28395095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 34775007 - 34774931
Alignment:
Q  232 atcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa-gcccataactaaacttgagcc 308  Q
    |||||||| ||||||||||||| |||| |||    ||||||||||| ||||||||| ||||| |||||||||||||||    
T  34775007 atcaatcagcttccaccacctctcaacctccaattcaccgaaagaa-accataaaaagcccaaaactaaacttgagcc 34774931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 38544664 - 38544700
Alignment:
Q  214 tgagtcactattctaaagatcaatcaacttccaccac 250  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  38544664 tgagccactattctaaagatcaatcatcttccaccac 38544700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 82 - 308
Target Start/End: Original strand, 22675116 - 22675345
Alignment:
Q  82 aacatcaccacctaaaaacagacccc-ttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccc- 179  Q
    |||||||||||||||||||||||||| ||||| |||||| ||| ||| ||||||||| ||||||||| ||| ||||||||| |||| ||||||||||||     
T  22675116 aacatcaccacctaaaaacagacccccttcacaaaaccagcactgaataaacaaaatccataaccactcatcgccactacttaaccgaaaataacccccc 22675215  T
Q  180 tctaaatgaaaca-ctcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaac 278  Q
    ||||||||||||| ||| || || ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  22675216 tctaaatgaaacaactccagccgaatcccttaagttgagccactagtctaaagatcaatcaacttccaccacctcacaacctccggaccactgaaagaac 22675315  T
Q  279 accataaaagcccataactaaacttgagcc 308  Q
    ||||| |||||||| ||| |||||||||||    
T  22675316 accattaaagcccaaaaccaaacttgagcc 22675345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 27713351 - 27713129
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataa--ccccc 179  Q
    ||||||||| |||||||||| |||||||||||||||||||||    ||||| |||| ||||   |||||| ||||||||||||||||||||||  |||||    
T  27713351 aacatcaccgcctaaaaacaaaccccttcacgaaaccaccac---taaaactaaatccata---acccatcgccactactcaacccaaaataaccccccc 27713258  T
Q  180 tctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaaca 279  Q
    |||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||| |  ||||||||||| ||||| ||  ||||||||||||||||    
T  27713257 tctaaatgaaacactccagccgcatcccataagttgagccactattctaaagatcaataagtttccaccacctgacaacctctagaccaccgaaagaaca 27713158  T
Q  280 ccataaaagcccataactaaacttgagcc 308  Q
     |||||||||||| ||| |||||||||||    
T  27713157 acataaaagcccaaaaccaaacttgagcc 27713129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 292
Target Start/End: Complemental strand, 8731134 - 8730994
Alignment:
Q  153 gccactactcaacccaaaataac-cccctctaaatgaaacactcaagtcg-catcccctaagttgagtcactattctaaagatcaatcaacttccaccac 250  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||  ||  |||| || |||||||| | |||||||||| |||||| | ||||||||||    
T  8731134 gccactactcatcccaaaataacacccctctaaatgaaaca-tcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttccaccac 8731036  T
Q  251 ctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    |||  ||| | ||| ||| ||||||||||||| |||||||||    
T  8731035 ctctgaaccttcggtccatcgaaagaacaccaaaaaagccca 8730994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 39184112 - 39184187
Alignment:
Q  214 tgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagc 289  Q
    |||| |||||||| |||||||||||| ||||||| |||||||||| || || ||||||||||||||||| ||||||    
T  39184112 tgagccactattcaaaagatcaatcagcttccactacctcacaacctctggtccaccgaaagaacaccaaaaaagc 39184187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 17854001 - 17854058
Alignment:
Q  222 tattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaaca 279  Q
    |||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||    
T  17854001 tattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaaca 17854058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 24072190 - 24072267
Alignment:
Q  210 aagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa 287  Q
    ||||||||||||||||||||||| || ||| | || |||||||  |||| ||||| ||||||||||||||||| ||||    
T  24072190 aagttgagtcactattctaaagaccattcagcatcaaccacctttcaacctccggtccaccgaaagaacaccaaaaaa 24072267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 39024379 - 39024442
Alignment:
Q  224 ttctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa 287  Q
    ||||| |||||| |||| |||||||||||| ||||||||   ||||||||||||||||||||||    
T  39024379 ttctacagatcattcaagttccaccacctctcaacttccaatccaccgaaagaacaccataaaa 39024442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 13954175 - 13954255
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccat-aaaagcccataactaaacttgagcc 308  Q
    ||||||||||||  |||||||||||  |||||||||  |||||||||||| ||||| ||||||||| ||| |||||||||||    
T  13954175 aaagatcaatcagtttccaccacctttcaacttccgatccaccgaaagaa-accataaaaagcccaaaaccaaacttgagcc 13954255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 31721820 - 31721763
Alignment:
Q  225 tctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacca 282  Q
    ||||||||||||||||||||||||||| | |||| ||||| |||| ||| ||||||||    
T  31721820 tctaaagatcaatcaacttccaccaccgcgcaacatccggtccactgaaggaacacca 31721763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 21402778 - 21402836
Alignment:
Q  228 aaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaa 287  Q
    |||||||||||||||||||||||||| |||| |||   |||||||||||| |||||||||    
T  21402778 aaagatcaatcaacttccaccacctctcaacctccaatccaccgaaagaa-accataaaa 21402836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 25657983 - 25658019
Alignment:
Q  135 aattcataaccacccattgccactactcaacccaaaa 171  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  25657983 aattcataaccactcattgccactactcaccccaaaa 25658019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 6844 - 6618
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataaccccctc 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||| |||||| ||| || ||| |||||||||| ||||||| ||||||    
T  6844 aacatcaccacctaaaaacagaccccttcacaaaaccaccactaaaaaaacaaaatccataacaacctatcgccgctactcaacctaaaataatcccctc 6745  T
Q  182 taaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacacc 281  Q
    | | | |||||||| || |||||||||||||||||| |||||||||||||| |||||| |||||||| || |||||| ||  |||||||||||||||||     
T  6744 tcagttaaacactctagccgcatcccctaagttgagccactattctaaagaccaatcatcttccacctccacacaacctctagaccaccgaaagaacaca 6645  T
Q  282 ataaaagcccataactaaacttgagcc 308  Q
    | ||||||| | ||| |||||||||||    
T  6644 aaaaaagccaaaaaccaaacttgagcc 6618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 113 - 308
Target Start/End: Complemental strand, 47945964 - 47945766
Alignment:
Q  113 gaaaccaccacggaaaaaa-caaaattcataaccacccattgccactactcaacccaaaataaccccctct--aaatgaaacactcaagtcgcatcccct 209  Q
    ||||||||||| ||||||| |||| | || ||||| |||| |||||||  ||| |||||||||||||||||  ||||||||||||| ||  |||||||||    
T  47945964 gaaaccaccaccgaaaaaaacaaagtccaaaaccatccatcgccactatacaagccaaaataaccccctctctaaatgaaacactccagctgcatcccct 47945865  T
Q  210 aagttgagtcactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttgagcc 308  Q
    ||  |||| |||||||| |||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  47945864 aaactgagccactattcaaaagatcaattaacttccaccacctcacaatctccggaccaccgaaagaacaccataaaagcccaaaatcaaacttgagcc 47945766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 25594327 - 25594499
Alignment:
Q  82 aacatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccct 180  Q
    |||||||| |||||||| || || ||||||| |||| ||||| |||||||| | || || |||||||||| ||||||||||| ||||| ||||| | |||    
T  25594327 aacatcactacctaaaa-catactccttcacaaaacgaccactgaaaaaacgatatcca-aaccacccatcgccactactcatcccaagataacactcct 25594424  T
Q  181 ctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctcac 255  Q
    ||||||| |||||||    | | || || |||||||| ||||||||||||||||||||  |||||||||| ||||    
T  25594425 ctaaatggaacactccgtcctcgtctccaaagttgagccactattctaaagatcaatccgcttccaccacatcac 25594499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 1652823 - 1652904
Alignment:
Q  224 ttctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagcccataactaaacttga 305  Q
    |||||||||||| ||||||||| ||||| |  ||| ||||| ||||||||||||||||| ||||||||| ||| ||||||||    
T  1652823 ttctaaagatcattcaacttccgccaccgcttaacctccggtccaccgaaagaacaccaaaaaagcccaaaaccaaacttga 1652904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 5556720 - 5556647
Alignment:
Q  219 cactattctaaagatcaatcaacttccaccacctcacaacttccggaccaccgaaagaacaccataaaagccca 292  Q
    |||| ||||||||||||| || | |||||||||||  ||| ||||| ||||||||||||||||  |||||||||    
T  5556720 cacttttctaaagatcaaccagcctccaccacctctaaacctccggtccaccgaaagaacacctgaaaagccca 5556647  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 27399189 - 27399137
Alignment:
Q  142 aaccacccattgccactactcaacccaaaataac-cccctctaaatgaaacac 193  Q
    |||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||    
T  27399189 aaccacccattgccactactcagcccaaaagaacacccgtctaaatgaaacac 27399137  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 36602119 - 36602165
Alignment:
Q  128 aaaacaaaattcataaccacccattgccactactcaacccaaaataa 174  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||||    
T  36602119 aaaacaaaattcataaccacccatcgccgctactcactccaaaataa 36602165  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 4171154 - 4171098
Alignment:
Q  11 cagagaccggtgaaatagaaaatgcaaatgaaaggcgtcgtatataagcggaacacc 67  Q
    |||||||||||||||  || ||| ||||  |||||||||||||||| ||||||||||    
T  4171154 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 4171098  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 292
Target Start/End: Original strand, 17720573 - 17720711
Alignment:
Q  155 cactactcaacccaaaa-taaccccctctaaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctc 253  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||    | |||| | ||| ||||| |||||||||||||||||||||||||||||||||||    
T  17720573 cactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcacttaatttgagccactattctaaagatcaatcaacttccaccacctc 17720672  T
Q  254 acaacttccggaccaccgaaagaacaccataaaagccca 292  Q
     |||| ||  | ||||||||||||||||| || ||||||    
T  17720673 tcaacctcaagtccaccgaaagaacaccaaaacagccca 17720711  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 15906971 - 15906802
Alignment:
Q  83 acatcaccacctaaaaacagaccccttcacgaaaccaccacggaaaaaacaaaattcataaccacccattgccactactcaacccaaaataac-cccctc 181  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| | |||||||  || |||||||||   ||||||||||||| ||||||||||| || |||    
T  15906971 acatcaccacc-aaaaacagatcccttcacgaaacgaccactg-aaaaacagtatccataaccacatgttgccactactcatcccaaaataacacctctc 15906874  T
Q  182 taaatgaaacactcaagtcgcatcccctaagttgagtcactattctaaagatcaatcaacttccaccacctc 253  Q
    ||||| |||||| |    | |||| |||||||||||  ||||||||| | |||||||| |||||||||||||    
T  15906873 taaataaaacacactgtcctcatcacctaagttgagctactattctataaatcaatcatcttccaccacctc 15906802  T

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Target: scaffold1613 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 943 - 979
Alignment:
Q  214 tgagtcactattctaaagatcaatcaacttccaccac 250  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  943 tgagccactattctaaagatcaatcatcttccaccac 979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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