View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0849_low_28 (Length: 306)

Name: NF0849_low_28
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0849_low_28
NF0849_low_28
[»] chr1 (1 HSPs)
chr1 (30-291)||(46753868-46754129)
[»] chr2 (2 HSPs)
chr2 (30-284)||(1680593-1680847)
chr2 (75-150)||(26159664-26159739)
[»] chr3 (1 HSPs)
chr3 (162-291)||(44659467-44659597)
[»] chr4 (3 HSPs)
chr4 (75-150)||(26698106-26698181)
chr4 (83-150)||(55416932-55416999)
chr4 (97-150)||(48825355-48825408)
[»] chr6 (1 HSPs)
chr6 (74-150)||(12250931-12251007)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 46753868 - 46754129
Alignment:
Q  30 tttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46753868 tttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttc 46753967  T
Q  130 ttaccacatgtggtggcttaacacactctcatatttgggagtttttatttagctccggtctcttttattctttttagtctttgcctgcattttggctgta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  46753968 ttaccacatgtggtggcttaacacactctcatatttgggagtttttatttagctccggtctcttttattctttttagtctttgcctacattttggctata 46754067  T
Q  230 tcactaagcttttgttcttgttgtccatatgtaactgatatttttattctctagttcatctc 291  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  46754068 tcactaagtttttgttcttgttgtccatatgtaactgatatttttattctttagttcttctc 46754129  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 1680593 - 1680847
Alignment:
Q  30 tttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttc 129  Q
    ||||||||||||| ||| |||||||||| || ||| |||||||||||||  | |||| ||||||||  |||||| ||||||||| |||||||| |||  |    
T  1680593 tttttcaacaaaaagggtactccattaaacaactcatagaaaaggttaaactccaatccttctagtgattgaagacaaatcatcatagttttgatttcac 1680692  T
Q  130 ttaccacatgtggtggcttaacacactctcatatttgggagtttttatttagctccggtctcttttattctttttagtctttgcctgcattttggctgta 229  Q
    ||||||||  |||||| ||||  ||||||||| ||| ||||||||||||||| | || | ||||||||||| |||||| ||||| ||  |||||||| ||    
T  1680693 ttaccacacctggtggtttaagccactctcatgtttaggagtttttatttagtttcgatttcttttattctctttagtgtttgcatgatttttggctata 1680792  T
Q  230 tcactaagcttttgttcttgttgtccatatgtaactgatatttttattctctagt 284  Q
    ||| |||| ||||||||||| | | || |||  ||||||||| || |||||||||    
T  1680793 tcattaagtttttgttcttggttttcagatgcgactgatattatttttctctagt 1680847  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 26159739 - 26159664
Alignment:
Q  75 ttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 150  Q
    ||||| |||||| |||||||| | ||||| |||||||||||| ||||||||||  ||| |||||||||||||||||    
T  26159739 ttaagcttcaatccttctagtggctgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaa 26159664  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 44659467 - 44659597
Alignment:
Q  162 atttgggagtttttatttagctccggtctcttttattctttttagtctttgcctgcatttt-ggctgtatcactaagcttttgttcttgttgtccatatg 260  Q
    |||||| |||| ||||||| || |||||||||| |||| ||||| |  |||| |||||||| |||||||| |||||| ||||||||||||| |||| |||    
T  44659467 atttggaagttcttatttaacttcggtctctttaattcgttttaatggttgcatgcatttttggctgtattactaagattttgttcttgttatccagatg 44659566  T
Q  261 taactgatatttttattctctagttcatctc 291  Q
    |||||||||||||||||||||||| ||||||    
T  44659567 taactgatatttttattctctagtccatctc 44659597  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 26698106 - 26698181
Alignment:
Q  75 ttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 150  Q
    ||||| |||||| ||||| || ||||||| |||||||||||| ||||||||||  ||| |||||||||||||||||    
T  26698106 ttaagcttcaatccttctggtggttgaagccaaatcatcctaattttgcttttaattatcacatgtggtggcttaa 26698181  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 55416932 - 55416999
Alignment:
Q  83 caattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 150  Q
    |||||||||| || |||||||||||||||||||| ||||||||||  ||||||||  |||||||||||    
T  55416932 caattcttctggtggttgaaggcaaatcatcctaattttgcttttaattaccacacatggtggcttaa 55416999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 48825408 - 48825355
Alignment:
Q  97 gttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 150  Q
    |||||||||||||||||||| ||||| ||||  ||||||||||| |||||||||    
T  48825408 gttgaaggcaaatcatcctaattttgtttttaattaccacatgtcgtggcttaa 48825355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 12250931 - 12251007
Alignment:
Q  74 gttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaa 150  Q
    |||||| | |||| |||||||| |||||| |||||||||| || ||||||||||  ||| |||||||||||||||||    
T  12250931 gttaagctccaatccttctagtggttgaaagcaaatcatcataattttgcttttaattatcacatgtggtggcttaa 12251007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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