View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0849_low_3 (Length: 613)
Name: NF0849_low_3
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 100 - 451
Target Start/End: Complemental strand, 6999051 - 6998699
Alignment:
| Q |
100 |
gagtgagatgaagtctcgtgtaaatagttccagtatcacaagtacaaatattttgaacagttggaatgtaa-catcatcccttagcaaacttgctcaaaa |
198 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6999051 |
gagtgcgatgaagtctcgtgtcaatagtcccagtatcacaagtacaaatattttgaacagttggaatgtatgcatcatcccttagcaaacttgctcaaaa |
6998952 |
T |
|
| Q |
199 |
aatttaccaagaaaatgttgattcctgcataaaatgttagtagacaattctgagacaatgattcgaggtatatctaagaatatgagtatttgagtaatta |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6998951 |
aatttaccaagaaaatgttgattcctgcataaaatgttagtagacaattctgagacaatgattcgaggtatatctaagaatatgagtatttgagtaatta |
6998852 |
T |
|
| Q |
299 |
agagaggaggaaatccaaccactagtggctagaagtttatccaacctagattttatgtgatgatgatcgtgttgattattagcccagattttaacgagga |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6998851 |
agagaggaggaaatccaaccactagtggctagaagtttatccaacctagattttatgtgatgatgatcgtgttgattattagcccagattttaacgagga |
6998752 |
T |
|
| Q |
399 |
aagaacgaatagaaaaggaaaggcagattagagtacacagaaaattaaggagt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6998751 |
aagaacgaatagaaaaggaaaggcagattagagtacacagaaaattaaggagt |
6998699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 487 - 585
Target Start/End: Complemental strand, 6998663 - 6998566
Alignment:
| Q |
487 |
ttatttgttatctatttgttttagaaggtgaaatgcatttcctgaaagatttttcaaacaaataacaattgacataaggttatttgacagttcaaagtt |
585 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6998663 |
ttatttgttatctatttgttttagaagatgaaatgcatt-cctgaaagattttttaaacaaataacaattgacataaggttatttgacagttcaaagtt |
6998566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 574 times since January 2019
Visitors: 6130