View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0849_low_38 (Length: 255)

Name: NF0849_low_38
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0849_low_38
NF0849_low_38
[»] chr4 (12 HSPs)
chr4 (1-158)||(21988057-21988212)
chr4 (3-101)||(28966716-28966815)
chr4 (1-70)||(12296048-12296118)
chr4 (9-97)||(38929680-38929769)
chr4 (1-70)||(46698923-46698992)
chr4 (13-80)||(16501596-16501663)
chr4 (1-55)||(53823559-53823614)
chr4 (1-54)||(19815362-19815416)
chr4 (1-74)||(25753041-25753115)
chr4 (1-70)||(50102408-50102478)
chr4 (1-46)||(19672999-19673044)
chr4 (6-73)||(22811302-22811370)
[»] chr7 (10 HSPs)
chr7 (1-101)||(47457153-47457254)
chr7 (1-72)||(13311709-13311781)
chr7 (1-74)||(42533390-42533464)
chr7 (6-74)||(8745022-8745091)
chr7 (9-73)||(11379273-11379338)
chr7 (1-69)||(16954527-16954596)
chr7 (6-70)||(34389835-34389900)
chr7 (1-80)||(6716874-6716954)
chr7 (8-74)||(1320664-1320730)
chr7 (12-63)||(1820153-1820205)
[»] chr5 (12 HSPs)
chr5 (4-101)||(22675454-22675552)
chr5 (9-80)||(8730780-8730852)
chr5 (1-82)||(27712937-27713019)
chr5 (1-80)||(7392169-7392249)
chr5 (1-70)||(39184325-39184395)
chr5 (1-73)||(13954371-13954444)
chr5 (6-74)||(14302573-14302642)
chr5 (8-70)||(24072411-24072474)
chr5 (6-53)||(8297358-8297406)
chr5 (9-70)||(17854214-17854277)
chr5 (1-74)||(26046102-26046176)
chr5 (6-46)||(7195381-7195421)
[»] chr1 (11 HSPs)
chr1 (4-101)||(19598485-19598583)
chr1 (1-70)||(38544875-38544945)
chr1 (1-70)||(50589343-50589413)
chr1 (6-72)||(24658801-24658868)
chr1 (1-80)||(17033449-17033529)
chr1 (6-44)||(9313432-9313470)
chr1 (6-54)||(6583334-6583383)
chr1 (6-70)||(7857527-7857592)
chr1 (9-54)||(32864708-32864754)
chr1 (21-80)||(10785490-10785550)
chr1 (5-45)||(52278397-52278437)
[»] chr6 (10 HSPs)
chr6 (1-101)||(13098701-13098802)
chr6 (1-70)||(32935477-32935547)
chr6 (13-80)||(9223905-9223972)
chr6 (7-74)||(3880727-3880795)
chr6 (12-80)||(12793978-12794046)
chr6 (6-54)||(15132665-15132714)
chr6 (1-46)||(16510440-16510485)
chr6 (6-74)||(20701946-20702015)
chr6 (13-74)||(21265985-21266046)
chr6 (13-80)||(26534867-26534935)
[»] chr2 (15 HSPs)
chr2 (1-89)||(15126541-15126630)
chr2 (9-80)||(25505055-25505127)
chr2 (1-69)||(2062782-2062851)
chr2 (7-72)||(22885276-22885342)
chr2 (6-70)||(3745233-3745298)
chr2 (1-70)||(29487004-29487075)
chr2 (12-82)||(4471785-4471856)
chr2 (6-70)||(7874165-7874230)
chr2 (10-54)||(37770788-37770833)
chr2 (11-70)||(15723043-15723103)
chr2 (7-70)||(27739849-27739913)
chr2 (1-70)||(15710580-15710650)
chr2 (1-46)||(1269380-1269425)
chr2 (6-70)||(17105284-17105349)
chr2 (7-43)||(14566348-14566384)
[»] chr3 (12 HSPs)
chr3 (1-92)||(47945563-47945655)
chr3 (4-80)||(30935532-30935608)
chr3 (1-62)||(823573-823635)
chr3 (1-74)||(14755401-14755475)
chr3 (9-70)||(27398831-27398893)
chr3 (1-76)||(4464073-4464150)
chr3 (9-64)||(5556449-5556505)
chr3 (13-80)||(25594669-25594737)
chr3 (6-73)||(25647554-25647622)
chr3 (6-41)||(23328492-23328527)
chr3 (6-45)||(37123281-37123320)
chr3 (6-46)||(40023714-40023754)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-101)||(6408-6509)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-70)||(1154-1224)
[»] chr8 (5 HSPs)
chr8 (1-72)||(17720842-17720914)
chr8 (6-72)||(10248696-10248763)
chr8 (11-80)||(35062321-35062390)
chr8 (1-72)||(15906557-15906629)
chr8 (18-80)||(10552133-10552195)
[»] scaffold0050 (1 HSPs)
scaffold0050 (6-73)||(36577-36645)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-46)||(19280-19325)
[»] scaffold0062 (3 HSPs)
scaffold0062 (11-70)||(71600-71660)
scaffold0062 (1-70)||(59492-59562)
scaffold0062 (11-70)||(46964-47024)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-46)||(42277-42322)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-46)||(58025-58070)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 21988057 - 21988212
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatca 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  21988057 aagaatgcagctagacaccaactcctgatctcgaaacaaaagtaaccggcccaccagaattcagcacacaaaaagtaagactgcggtggttcatacatca 21988156  T
Q  100 atnnnnnnnnnggaacaaaatgctcagctcaaaggatacgcaccctaaaaaacaatcta 158  Q
    ||         ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  21988157 at---caaaaaggaacaaaatgctcagctcaaaggatacgcaccctcaaagacaatcta 21988212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 28966815 - 28966716
Alignment:
Q  3 gaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatcaat 101  Q
    |||||||||||||| |||||| | ||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||| |||||| || ||||||||    
T  28966815 gaatgcagctagacgccaacttccgatctcgaagccaaagtaaccggcccaccagaatccagcacactaaaagtaagactgcggtggtgcaaacatcaat 28966716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12296118 - 12296048
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  12296118 aagaatgcagctagacgccaactcccgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaa 12296048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 38929769 - 38929680
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacat 97  Q
    ||||| || |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  38929769 agctaaacgccaacttccgatctcgaagcaaaagtaaccggcccaccagaatccagcacacaaaaagtaagattgcggtggttcatacat 38929680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 46698923 - 46698992
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  46698923 aagactgcagctagacaccaactcccgatctcgaagcaaaagtaatcggccca-cagaatccagcacacaa 46698992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 16501663 - 16501596
Alignment:
Q  13 agacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaaggaagac 80  Q
    |||||||| |||| |||||||||||||||  | ||||||||||| |||||  |||||||||| |||||    
T  16501663 agacaccagctcccgatctcgaagcaaaataatcggcccaccagcatccaaaacacaaaaagtaagac 16501596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 53823559 - 53823614
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccacca 55  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||| ||||||||||    
T  53823559 aagattgcagttagacaccgactcccgatctcgaagcaaaagtaaccggcccacca 53823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19815362 - 19815416
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccacc 54  Q
    |||| |||||||||||||| ||||  |||||||||||||||||||| ||||||||    
T  19815362 aagattgcagctagacaccgactctcgatctcgaagcaaaagtaactggcccacc 19815416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25753115 - 25753041
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaag 74  Q
    |||| |||||||||||||| ||||| ||||||||||||||| ||| | ||||| | ||| |||||| ||||||||    
T  25753115 aagattgcagctagacaccgactcccgatctcgaagcaaaattaagctgcccatcggaaaccagcaaacaaaaag 25753041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50102478 - 50102408
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    ||||||||| |||||| |||||| |  |||||||||||||||||| |||   |||||||||||||||||||    
T  50102478 aagaatgcaactagacgccaacttccaatctcgaagcaaaagtaatcggttgaccagaatccagcacacaa 50102408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19673044 - 19672999
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||    
T  19673044 aagattgcagctagacactgactcccgatctcgaagcaaaagtaac 19672999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 22811302 - 22811370
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaa 73  Q
    |||| ||||||||||| | | ||||||||||||||||||| || ||||||  || ||||||||||||||    
T  22811302 tgcaactagacaccaagttccgatctcgaagcaaaagtaaccgacccaccgaaaaccagcacacaaaaa 22811370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 47457153 - 47457254
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatca 99  Q
    ||||||||||| |||| |||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  47457153 aagaatgcagccagacgccaactcccgatctcgaatcaaaagtatccggcccaccagaatccagcacacaaaaagtaagactgcggtggttcatacatca 47457252  T
Q  100 at 101  Q
    ||    
T  47457253 at 47457254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13311781 - 13311709
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagta-acggcccaccagaatccagcacacaaaa 72  Q
    |||||||||| |||||||||||||| |||||||||| |||||||  |||||||||||||||||||||||||||    
T  13311781 aagaatgcagttagacaccaactcccgatctcgaaggaaaagtactcggcccaccagaatccagcacacaaaa 13311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42533390 - 42533464
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaag 74  Q
    |||||||||||| |||||  ||||| ||||||||||||||||||| ||||||| | ||  |||||||||||||||    
T  42533390 aagaatgcagctggacacagactcccgatctcgaagcaaaagtaaccggcccatcggagaccagcacacaaaaag 42533464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 8745091 - 8745022
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaag 74  Q
    ||||||||||||||  || | ||||||||||||||||||| |||||||||  || |||||||||||||||    
T  8745091 tgcagctagacaccgccttccgatctcgaagcaaaagtaaccggcccaccgaaaaccagcacacaaaaag 8745022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 11379273 - 11379338
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaa 73  Q
    ||||||||||||||||| ||||| ||| ||||| ||| || ||||| |||||||||||||||||||    
T  11379273 agctagacaccaactcccgatcttgaatcaaaaataaccgacccactagaatccagcacacaaaaa 11379338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16954596 - 16954527
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacaca 69  Q
    |||| |||||||||||||||||||  ||||| ||||||||||||| ||||||| | ||| ||||||||||    
T  16954596 aagattgcagctagacaccaactctcgatctggaagcaaaagtaatcggcccatcggaaaccagcacaca 16954527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 34389900 - 34389835
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaa 70  Q
    |||| ||||||||||||| ||||||||||||||||| |||| |||||| ||||  |||||||||||    
T  34389900 tgcaactagacaccaacttctgatctcgaagcaaaaataactggcccatcagacaccagcacacaa 34389835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6716874 - 6716954
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagac 80  Q
    |||| |||||||||||||| ||||| |||||| ||| ||||||||| ||||||||  || ||||||| ||||||| |||||    
T  6716874 aagattgcagctagacaccgactcccgatctcaaagtaaaagtaactggcccaccgaaaaccagcacgcaaaaagtaagac 6716954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 1320730 - 1320664
Alignment:
Q  8 cagctagacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaag 74  Q
    |||||||||||||||||| |||||||||||||||  | ||| ||||| ||| ||| |||| ||||||    
T  1320730 cagctagacaccaactcccgatctcgaagcaaaaaaatcggtccaccggaaaccaacacagaaaaag 1320664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 1820153 - 1820205
Alignment:
Q  12 tagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccag 63  Q
    ||||||| | |||||||||||||||||||| ||| || |||||||||||||||    
T  1820153 tagacactagctcctgatctcgaagcaaaaataatcgccccaccagaatccag 1820205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 22675454 - 22675552
Alignment:
Q  4 aatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatcaat 101  Q
    ||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||    
T  22675454 aatgcagctagacgccaactcccggtctcgaagcaaaagtaaccggcccaccagaatccaacacacaaaaagtaagattgtggtggttcaaacatcaat 22675552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 8730852 - 8730780
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  8730852 agctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaataagtaagac 8730780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27713019 - 27712937
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagactg 82  Q
    ||||||||| |||||| |||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  27713019 aagaatgcatctagacgccaactcccgacctcgaagcaaaagtaaccggcccatcagaatccagcacacaaaaagtaagactg 27712937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7392169 - 7392249
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagac 80  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||  ||| ||||||||||| |||||    
T  7392169 aagattgcagctagacaccaactcccgatctcgaagcaaaagtaaccggtccatcagataccaacacacaaaaagtaagac 7392249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39184325 - 39184395
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaacg-gcccaccagaatccagcacacaa 70  Q
    |||| |||| |||||| |||||||| ||||||||| ||||||||||  |||||||||||||||||||||||    
T  39184325 aagattgcaactagacgccaactcccgatctcgaatcaaaagtaacctgcccaccagaatccagcacacaa 39184395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13954371 - 13954444
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaa 73  Q
    |||| |||||||||||||| |||| |||||||||||||||||||| |||||||||  || |||||| |||||||    
T  13954371 aagattgcagctagacaccgactcttgatctcgaagcaaaagtaaccggcccaccgaaaaccagcatacaaaaa 13954444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 14302573 - 14302642
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaag 74  Q
    |||||||||||||  ||||| |||||||||||||||||||| || || |||||| |||||||||||||||    
T  14302573 tgcagctagacacggactcccgatctcgaagcaaaagtaacggggcccccagaaaccagcacacaaaaag 14302642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 24072411 - 24072474
Alignment:
Q  8 cagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||||| || |||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||    
T  24072411 cagctaaacgccaactcccgatcttgaagcaaaagtaaccggcccactagaatccagcacacaa 24072474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 8297406 - 8297358
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccac 53  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  8297406 tgcagctagacaccaactctcgatctcgaagcaaaagtaatcggcccac 8297358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 17854214 - 17854277
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaa-gtaac-ggcccaccagaatccagcacacaa 70  Q
    ||||||| ||||||||| |||||| |||||||| ||||  ||||||||||||||||||||||||    
T  17854214 agctagagaccaactcccgatctcaaagcaaaaagtaaatggcccaccagaatccagcacacaa 17854277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26046102 - 26046176
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaag 74  Q
    |||| ||||||||| |||| ||||| | ||||||||||||| ||| | ||||||||||| | |||||||||||||    
T  26046102 aagattgcagctagccaccgactcccggtctcgaagcaaaattaatctgcccaccagaaactagcacacaaaaag 26046176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 7195381 - 7195421
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    ||||||||| |||| ||||| ||||||||||||||||||||    
T  7195381 tgcagctagccaccgactcccgatctcgaagcaaaagtaac 7195421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 19598583 - 19598485
Alignment:
Q  4 aatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatcaat 101  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||| || ||||||||    
T  19598583 aatgcagctagacgccaacttctgatctcgaagcaaaagtaaccggcccaccagagtccagcacacaaaaagtaagactgcggtggtgcaaacatcaat 19598485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38544875 - 38544945
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| ||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||    
T  38544875 aagattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaa 38544945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50589343 - 50589413
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    ||||| |||||||||| |||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  50589343 aagaaagcagctagacgccaagtcccgatctcgaagcaaaattaaccggcccaccagaatccagcacacaa 50589413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 24658868 - 24658801
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaa 72  Q
    |||||||||||||||||||| ||||| ||||||||| ||| ||||||||| || ||||||||||||||    
T  24658868 tgcagctagacaccaactcccgatcttgaagcaaaaataaccggcccaccggactccagcacacaaaa 24658801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 17033529 - 17033449
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagac 80  Q
    |||| |||| |||||| |||| ||  ||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||    
T  17033529 aagattgcaactagacgccaattctcgatctcgaaacaaaagtaaccggcccaccagaatccagcacacaataagtaagac 17033449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 9313432 - 9313470
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagta 44  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  9313432 tgcagctagacaccaactcccgatctcgaagcaaaagta 9313470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 6583334 - 6583383
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccacc 54  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  6583334 tgcagctagacaccgactcccgatctcgaagcaaaagtaaccggcccacc 6583383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 7857592 - 7857527
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| ||||||||||||||| ||||||||||||||| ||| ||||||||  ||| |||||||||||    
T  7857592 tgcaactagacaccaactcccgatctcgaagcaaaaataatcggcccactggaaaccagcacacaa 7857527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 32864708 - 32864754
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaa-cggcccacc 54  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  32864708 agctagacaccgactcctgatttcgaagcaaaagtaaccggcccacc 32864754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 10785490 - 10785550
Alignment:
Q  21 actcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||| ||||||||||||||| |||| |||||||| ||| |||||||||||| || |||||    
T  10785490 actcccgatctcgaagcaaaattaaccggcccaccggaaaccagcacacaaacagtaagac 10785550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 52278437 - 52278397
Alignment:
Q  5 atgcagctagacaccaactcctgatctcgaagcaaaagtaa 45  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  52278437 atgcagctagacaccggctcctggtctcgaagcaaaagtaa 52278397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13098701 - 13098802
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatca 99  Q
    |||||||||||||||| ||||||||  |||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||| |||||| || ||||||    
T  13098701 aagaatgcagctagacgccaactcccaatctcgaagcaaaagtaaccggcccatcagaatgcagcacacaaaaagtaagactgcggtggtacaaacatca 13098800  T
Q  100 at 101  Q
    ||    
T  13098801 at 13098802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32935477 - 32935547
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| |||||||||||||||||| |||||||| |||||||||||| || |||||| |||||||||||||||    
T  32935477 aagattgcagctagacaccaacttctgatctcaaagcaaaagtaaccgacccaccggaatccagcacacaa 32935547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 9223972 - 9223905
Alignment:
Q  13 agacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||||||||||| |||||||||||||||  | ||||||||||| ||||| ||||||||||| |||||    
T  9223972 agacaccaactcccgatctcgaagcaaaataaccggcccaccagcatccatcacacaaaaagtaagac 9223905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 3880727 - 3880795
Alignment:
Q  7 gcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaag 74  Q
    ||||||||||||| ||||| |||||| ||||||||||||| |||||||| ||| |||||| ||||||||    
T  3880727 gcagctagacaccgactcccgatctcaaagcaaaagtaactggcccaccggaaaccagcaaacaaaaag 3880795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 12794046 - 12793978
Alignment:
Q  12 tagacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||| |||||||| |||||||||||||||| | || |||| ||||||||||||||||| ||| |||||    
T  12794046 tagactccaactcccgatctcgaagcaaaaggaccgacccatcagaatccagcacacaataagtaagac 12793978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 15132665 - 15132714
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccacc 54  Q
    ||||||||| |||| ||||| ||||||||||||||||||| |||||||||    
T  15132665 tgcagctagtcaccgactcccgatctcgaagcaaaagtaaccggcccacc 15132714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16510440 - 16510485
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    |||| ||||||||||| || ||||| ||||||||||||||||||||    
T  16510440 aagattgcagctagaccccgactcccgatctcgaagcaaaagtaac 16510485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 20701946 - 20702015
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaag 74  Q
    |||||||||||||| | ||| |||||| |||||||||||| ||||||| | ||| ||| |||||||||||    
T  20701946 tgcagctagacaccgaatcccgatctcaaagcaaaagtaaccggcccatcggaaaccatcacacaaaaag 20702015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 21266046 - 21265985
Alignment:
Q  13 agacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaag 74  Q
    |||||||| |||| |||||||||||||||  | ||||| ||||| ||||| |||||||||||    
T  21266046 agacaccagctcccgatctcgaagcaaaataaccggccaaccagcatccaccacacaaaaag 21265985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 26534867 - 26534935
Alignment:
Q  13 agacaccaactcctgatctcgaagcaaaagtaacgg-cccaccagaatccagcacacaaaaaggaagac 80  Q
    |||||||| |||| |||||||||||||||  | ||| |||||||| ||||| ||||||||||| |||||    
T  26534867 agacaccagctcccgatctcgaagcaaaataaccggccccaccagtatccaacacacaaaaagtaagac 26534935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15126541 - 15126630
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggt 89  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||| |||| || ||||||    
T  15126541 aagaatgcagctagacgccaactcccgatctcgaagcaaaagtaactgacccaccagaatctagcacacaaaaagtaagattgcggtggt 15126630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 25505055 - 25505127
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  25505055 agctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaataagtaagac 25505127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2062851 - 2062782
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacaca 69  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||||||||||    
T  2062851 aagaatgcagctagacaccaactcccgatctcgaagcaaaagtaattggcccaccagcatccagcacaca 2062782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 22885276 - 22885342
Alignment:
Q  7 gcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaa 72  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  22885276 gcagctagacaccaactcccgatctcgaagcaaaagtaaccggcccaccagcatccaacacacaaaa 22885342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 3745298 - 3745233
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaa 70  Q
    ||||||||||| |||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||    
T  3745298 tgcagctagacgccaactcccgatctcaaagtaaaagtaaccggcccaccagaatccagcacacaa 3745233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29487075 - 29487004
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac--ggcccaccagaatccagcacacaa 70  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||  | |||  |||||||||||||||||    
T  29487075 aagaaagcagctagacaccaactcccgatctcgaagcaaaagtaaccggccccgtcagaatccagcacacaa 29487004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 4471856 - 4471785
Alignment:
Q  12 tagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactg 82  Q
    ||||| |||||||| ||||| |||||||||||||| |||||||||||||||| ||||||| ||| |||||||    
T  4471856 tagacgccaactcccgatcttgaagcaaaagtaaccggcccaccagaatccatcacacaataagtaagactg 4471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 7874230 - 7874165
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||||||||||||||||||| |||||||||||||||  || ||||||||| ||  |||||||||||    
T  7874230 tgcagctagacaccaactcccgatctcgaagcaaaaaaaaccggcccaccggacaccagcacacaa 7874165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 37770788 - 37770833
Alignment:
Q  10 gctagacaccaactcctgatctcgaagcaaaagtaa-cggcccacc 54  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  37770788 gctagacaccaactcccgatctcgaagcaaaagtaaccggcccacc 37770833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 15723103 - 15723043
Alignment:
Q  11 ctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||||||||||||||  |||||||| ||||||||| ||| |||||||||||||||| ||||    
T  15723103 ctagacaccaactccctatctcgaaccaaaagtaaccggtccaccagaatccagcagacaa 15723043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 27739913 - 27739849
Alignment:
Q  7 gcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||||||||||| |||||| ||||||||||| ||| ||| |||||| ||||||||||||| ||||    
T  27739913 gcagctagacactaactcccgatctcgaagcgaaattaatcggcccgccagaatccagcatacaa 27739849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15710650 - 15710580
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| |||| ||| ||||||||||| |||||| ||||||||||||  |||||||||||||| |||| ||||    
T  15710650 aagattgcaactaaacaccaactcccgatctcaaagcaaaagtaattggcccaccagaatctagcagacaa 15710580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1269425 - 1269380
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||    
T  1269425 aagaatgcagctagacatcgactcccgatctcgaagcaaaattaac 1269380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 17105349 - 17105284
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    ||||||||||| || |||||| ||||| |||||||||||| || |||||| ||| |||||||||||    
T  17105349 tgcagctagacgccgactccttatctccaagcaaaagtaaccgacccaccggaaaccagcacacaa 17105284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 14566384 - 14566348
Alignment:
Q  7 gcagctagacaccaactcctgatctcgaagcaaaagt 43  Q
    ||||||||||||||||||  |||||||||||||||||    
T  14566384 gcagctagacaccaactctcgatctcgaagcaaaagt 14566348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47945655 - 47945563
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaaaggaagactgtggtggttca 92  Q
    |||||||| ||||||| |||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||| ||| ||| |||||||||    
T  47945655 aagaatgctgctagacgccaactcccgatctcgaagctaaagtaaccggcacaccagaatccagcacacaaaaagtaaggctgcggtggttca 47945563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 30935532 - 30935608
Alignment:
Q  4 aatgcagctagacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||| ||||||| ||||||||  ||||||||||||||  | ||||||| ||||||||||||||||| ||| |||||    
T  30935532 aatgccgctagacgccaactcccaatctcgaagcaaaataaccggcccatcagaatccagcacacaacaagtaagac 30935608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 823573 - 823635
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatcca 62  Q
    |||| |||| ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||    
T  823573 aagattgcaactagacaccaactcctgatcttgaagcaaaattaaccggtccaccagaatcca 823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14755401 - 14755475
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaag 74  Q
    |||| |||||||||| ||| ||||| ||||||||||||||||||| ||||||| | |||  ||||||||||||||    
T  14755401 aagattgcagctagataccgactcccgatctcgaagcaaaagtaaccggcccatcggaaatcagcacacaaaaag 14755475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 27398893 - 27398831
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaa 70  Q
    |||||||||| |||||| ||||||||||||||| |||| ||  ||||||||||||||||||||    
T  27398893 agctagacacaaactcccgatctcgaagcaaaaataactggtgcaccagaatccagcacacaa 27398831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4464073 - 4464150
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccacc-agaatccagcacacaaaaagga 76  Q
    |||| |||| ||||||||| ||||| ||||||||||||||||||| ||||||||| | || ||| |||||||||||||    
T  4464073 aagattgcaactagacaccgactcccgatctcgaagcaaaagtaaccggcccaccgaaaaaccaacacacaaaaagga 4464150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 5556505 - 5556449
Alignment:
Q  9 agctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagc 64  Q
    ||||||||||||||| | ||||||||| ||||||||| ||||||||| |||||||||    
T  5556505 agctagacaccaacttccgatctcgaatcaaaagtaaccggcccacctgaatccagc 5556449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 25594669 - 25594737
Alignment:
Q  13 agacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagac 80  Q
    ||||||||| ||| |||||||||| |||||||| ||||||| |||||||||||| |||| ||| |||||    
T  25594669 agacaccaagtcccgatctcgaagaaaaagtaatcggcccatcagaatccagcatacaataagtaagac 25594737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 25647622 - 25647554
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaa 73  Q
    |||||||||||||| ||||| | ||||||||||||||||| ||||||| | ||| ||| ||||||||||    
T  25647622 tgcagctagacaccgactcccgttctcgaagcaaaagtaaccggcccatcggaaaccaacacacaaaaa 25647554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 23328492 - 23328527
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaa 41  Q
    |||||||||||||||||||| |||||||||||||||    
T  23328492 tgcagctagacaccaactcccgatctcgaagcaaaa 23328527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 37123320 - 37123281
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa 45  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  37123320 tgcagctagacaccgactcccgatctcgaagcaaaagtaa 37123281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 40023714 - 40023754
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  40023714 tgcagctagacaccaacttccgatctcgaagcaaaaataac 40023754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 6509 - 6408
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaaggaagactgtggtggttcatacatca 99  Q
    |||||||||||||||||||||||||  ||||| |||||||||||| | ||||| |||||| || ||||||||||| ||||||| |||||| || ||||||    
T  6509 aagaatgcagctagacaccaactcccaatctcaaagcaaaagtaacctgcccatcagaatgcaacacacaaaaagtaagactgcggtggtacaaacatca 6410  T
Q  100 at 101  Q
    ||    
T  6409 at 6408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1154 - 1224
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| ||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||    
T  1154 aagattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaa 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17720842 - 17720914
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaa 72  Q
    ||||||||||||| || |||||||  |||||| |||||||||||| |||||||||||||||||||||||||||    
T  17720842 aagaatgcagctatacgccaactctcgatctcaaagcaaaagtaatcggcccaccagaatccagcacacaaaa 17720914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 10248696 - 10248763
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaac-ggcccaccagaatccagcacacaaaa 72  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||| ||| ||| |||||||||    
T  10248696 tgcagctagacaccgactcccgatctcgaagcaaaagtaactggcccaccggaaaccaccacacaaaa 10248763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 35062390 - 35062321
Alignment:
Q  11 ctagacaccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaaggaagac 80  Q
    |||||| |||||||| |||||||||||||||  || ||| || ||||||||||||||||| ||| |||||    
T  35062390 ctagacgccaactcccgatctcgaagcaaaatgaatggctcatcagaatccagcacacaataagtaagac 35062321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15906629 - 15906557
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaag-taacggcccaccagaatccagcacacaaaa 72  Q
    ||||| |||| |||||||||||||| ||||||||| |||||| || |||| | |||||||||| |||||||||    
T  15906629 aagaaagcagttagacaccaactcccgatctcgaaacaaaagttaccggctcgccagaatccaacacacaaaa 15906557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10552195 - 10552133
Alignment:
Q  18 ccaactcctgatctcgaagcaaaagtaacggcccaccagaatccagcacacaaaaaggaagac 80  Q
    |||||||| |||||||||||||||  | ||||||| || |||||||||||||| ||| |||||    
T  10552195 ccaactcccgatctcgaagcaaaatgatcggcccatcaaaatccagcacacaataagtaagac 10552133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 36645 - 36577
Alignment:
Q  6 tgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaaaaa 73  Q
    |||||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||| ||| ||||||||||    
T  36645 tgcagctagacaccgactcctgatctcgaatcaaaattaatcggcccaccggaaaccaacacacaaaaa 36577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19325 - 19280
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  19325 aagaatgcagctagacaccgactcccgatctcgaagcaaaattaac 19280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 71660 - 71600
Alignment:
Q  11 ctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||||||||||||||  |||||||| ||||||||| ||| |||||||||||||||| ||||    
T  71660 ctagacaccaactccctatctcgaaccaaaagtaaccggtccaccagaatccagcagacaa 71600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 59562 - 59492
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    |||| |||| ||| ||||||||||| |||||| ||||||||||||  |||||||||||||| |||| ||||    
T  59562 aagattgcaactaaacaccaactcccgatctcaaagcaaaagtaattggcccaccagaatctagcagacaa 59492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 47024 - 46964
Alignment:
Q  11 ctagacaccaactcctgatctcgaagcaaaagtaa-cggcccaccagaatccagcacacaa 70  Q
    ||||||||||||||   |||||||| ||||||||| ||| |||||||||||||||| ||||    
T  47024 ctagacaccaactcactatctcgaaccaaaagtaaccggtccaccagaatccagcagacaa 46964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42277 - 42322
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||    
T  42277 aagaatgcagctagacatcgactcccgatctcgaagcaaaattaac 42322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 58070 - 58025
Alignment:
Q  1 aagaatgcagctagacaccaactcctgatctcgaagcaaaagtaac 46  Q
    |||| |||||||||||| | ||||| ||||||||||||||||||||    
T  58070 aagattgcagctagacaacgactcccgatctcgaagcaaaagtaac 58025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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