View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0849_low_46 (Length: 251)

Name: NF0849_low_46
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0849_low_46
NF0849_low_46
[»] chr7 (1 HSPs)
chr7 (7-251)||(41876266-41876510)
[»] chr8 (1 HSPs)
chr8 (46-219)||(40867588-40867761)
[»] chr1 (2 HSPs)
chr1 (50-154)||(24800358-24800462)
chr1 (50-154)||(24817434-24817538)
[»] chr3 (1 HSPs)
chr3 (46-204)||(9735930-9736090)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 41876266 - 41876510
Alignment:
Q  7 tccaacaatatgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaa 106  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876266 tccaacaaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaa 41876365  T
Q  107 aaggagctgatgatgcagcgcaatctaaagcagctgggaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41876366 aaggagctgatgatgcagcgcaatctaaagcagctgggaggataataacattgcctgaggtcaataccatagcagatgggctccgagcatgtctcggaaa 41876465  T
Q  207 ttttacatggtaaaatcaaatattttgcaataaatttttgtggtc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41876466 ttttacatggtaaaatcaaatattttgcaataaatttttgtggtc 41876510  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 40867761 - 40867588
Alignment:
Q  46 ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctggga 145  Q
    ||||||||||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| || ||||| ||||| ||||||||||||||||| |    
T  40867761 ggagtagcattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatgacgcagcacaatctaaagcagctggaa 40867662  T
Q  146 ggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaa 219  Q
    ||||||||||| |||| |||  |||||| ||||| |||||||| ||||||| ||| ||| |||| |||||||||    
T  40867661 ggataataacattgcccgagaccaatactatagctgacgggctacgagcatttcttggagatttcacatggtaa 40867588  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 24800462 - 24800358
Alignment:
Q  50 tagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggat 149  Q
    ||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || |||||    
T  24800462 tagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggat 24800363  T
Q  150 aataa 154  Q
    |||||    
T  24800362 aataa 24800358  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 24817538 - 24817434
Alignment:
Q  50 tagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggat 149  Q
    ||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || |||||    
T  24817538 tagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggat 24817439  T
Q  150 aataa 154  Q
    |||||    
T  24817438 aataa 24817434  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 9736090 - 9735930
Alignment:
Q  46 ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatg--atgcagcgcaatctaaagcagctgg 143  Q
    ||||||||| |||||||||| || |||||| || ||||| | ||||||| ||||||||  |||||||||||||  ||||| ||||||||||  || |  |    
T  9736090 ggagtagcaatagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaagacaacaag 9735991  T
Q  144 gaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcgga 204  Q
    ||||||||||| | |||||||| | ||||  ||||||||| |||| ||||||| |||||||    
T  9735990 gaggataataaaattgcctgagataaatattatagcagacaggcttcgagcatttctcgga 9735930  T

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