View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0849_low_49 (Length: 231)

Name: NF0849_low_49
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0849_low_49
NF0849_low_49
[»] chr6 (2 HSPs)
chr6 (74-214)||(11609395-11609535)
chr6 (48-192)||(20916349-20916493)
[»] chr4 (2 HSPs)
chr4 (74-200)||(42329338-42329464)
chr4 (48-157)||(6612710-6612819)
[»] chr3 (6 HSPs)
chr3 (11-214)||(44491125-44491328)
chr3 (76-175)||(6010027-6010126)
chr3 (74-145)||(54565559-54565631)
chr3 (76-175)||(17782893-17782992)
chr3 (76-175)||(19091520-19091619)
chr3 (76-175)||(8562048-8562147)
[»] scaffold0123 (1 HSPs)
scaffold0123 (94-207)||(31904-32016)
[»] chr5 (2 HSPs)
chr5 (74-177)||(22790093-22790196)
chr5 (76-175)||(22288426-22288525)
[»] chr7 (2 HSPs)
chr7 (74-183)||(8866222-8866331)
chr7 (76-175)||(3209003-3209102)
[»] chr8 (3 HSPs)
chr8 (81-165)||(15994416-15994500)
chr8 (76-175)||(14501770-14501869)
chr8 (28-165)||(29383116-29383252)
[»] scaffold0252 (1 HSPs)
scaffold0252 (76-175)||(3951-4050)
[»] chr1 (2 HSPs)
chr1 (48-175)||(41327550-41327677)
chr1 (48-132)||(41337824-41337908)
[»] chr2 (1 HSPs)
chr2 (81-191)||(45009939-45010048)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 11609395 - 11609535
Alignment:
Q  74 gactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattc 173  Q
    ||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  11609395 gactaatgtctctcttaaaaataagaggtccggattgaattgccgaactaggtactttaaatctggaattgcattcgggctacccaaacccctgcaattc 11609494  T
Q  174 caacttatcaggctcattttcctcgacacctaatcttcttc 214  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11609495 caacttatcaggctcattttcctcgacacctaatcgtcttc 11609535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 20916493 - 20916349
Alignment:
Q  48 cgtaaatcgtcaattttagttagggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcat 147  Q
    |||||||| ||||||||| || ||  ||||| | |||| |||||||| | ||||||||| |||||| |  |||||||||  ||||  ||  |||||||      
T  20916493 cgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgggttgaagggtagaactaggtgttttaggtcgggaattgcgc 20916394  T
Q  148 tcgggctacctaaacccctgcaattccaacttatcaggctcattt 192  Q
    ||| |||||||||||||| ||||||||| | ||| || |||||||    
T  20916393 tcgagctacctaaaccccggcaattccaccctataagactcattt 20916349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 42329464 - 42329338
Alignment:
Q  74 gactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattc 173  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  42329464 gactaatgtctcacttaaaaataagaggtccggattgaagtgccgaactaggtactttaaatctggaattgcattcgggctacccaaacccctgcaattc 42329365  T
Q  174 caacttatcaggctcattttcctcgac 200  Q
    |||||||||||||||||||||||||||    
T  42329364 caacttatcaggctcattttcctcgac 42329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 6612819 - 6612710
Alignment:
Q  48 cgtaaatcgtcaattttagttagggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcat 147  Q
    |||||| | ||||||||| || |||| ||||||||||| |||||||| |  | |||||||||||||||| |||  || || ||||||||  || ||||      
T  6612819 cgtaaaacttcaattttatttcgggatactagtgtctcacttaagaagagtacgtccggattgaagtgctgaaggagatattttaaatcaggagttgcgc 6612720  T
Q  148 tcgggctacc 157  Q
    ||||||||||    
T  6612719 tcgggctacc 6612710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 44491328 - 44491125
Alignment:
Q  11 atcaatagaaaaataaaaatcaaagccgagcaaagatcgtaaatcgtcaattttagttagggagactagtgtctcgcttaagaataagaggtccggattg 110  Q
    ||||| ||||||  ||||||||||||| |||||  | ||||| || ||||||||| || ||  |||||| |||||  |||| ||||| ||||||||||||    
T  44491328 atcaaaagaaaagcaaaaatcaaagccaagcaagtaacgtaattcttcaattttatttcggtggactagcgtctcagttaaaaataaaaggtccggattg 44491229  T
Q  111 aagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattccaacttatcaggctcattttcctcgacacctaatctt 210  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||| |    
T  44491228 aagtaccgaactaggtactttaaatctggaattgcattcgggctacccaaacccctgcaattccaacttattagactcattttcctcgacaactaatcat 44491129  T
Q  211 cttc 214  Q
    ||||    
T  44491128 cttc 44491125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 6010027 - 6010126
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| ||||| ||||| ||||||||||| || ||||||||||||||||| |  ||  |||||||| |||||||||||| |||||  ||||||||    
T  6010027 ctagagtctcacttaaaaataaaaggtccggattaaaatgccgaactaggtacttaaggtcaggaattgcactcgggctacctacaccccgacaattcca 6010126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 54565559 - 54565631
Alignment:
Q  74 gactagtgtctcgcttaagaataagagg-tccggattgaagtgccgaactaggtactttaaatctagaattgc 145  Q
    ||||| |||||| ||||| ||||| ||| |||||||| ||||||||||||| |||||||||||| ||||||||    
T  54565559 gactaatgtctcacttaaaaataatagggtccggattaaagtgccgaactatgtactttaaatcaagaattgc 54565631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 17782992 - 17782893
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| |  ||  |||||||| |||||||||||| |||||  ||||||||    
T  17782992 ctagagtctcacttaaaaataaaaggtccagattgaaatgccgaactagatacttaaggtcgggaattgcactcgggctacctacaccccgacaattcca 17782893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 19091619 - 19091520
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| |  ||  |||||||| |||||||||||| |||||  ||||||||    
T  19091619 ctagagtctcacttaaaaataaaaggtccagattgaaatgccgaactagatacttaaggtcgggaattgcactcgggctacctacaccccgacaattcca 19091520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 8562147 - 8562048
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| |||||||| |  || ||||| ||||||||||| ||||||||||| |  || ||||||| | |||||||||||| |||||  ||||||||    
T  8562147 ctagagtctcacttaagaaaagaagatccgggttgaagtgccggactaggtacttaaggtcgagaattgtactcgggctacctacaccccgacaattcca 8562048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 32016 - 31904
Alignment:
Q  94 ataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattccaacttatcaggctcatttt 193  Q
    ||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  32016 ataagaggtccggtttgaagtgccaaactagatactttaaatctggaattgcattcgggctacccaaacccctgcaattccaacttatcagactca-ttt 31918  T
Q  194 cctcgacacctaat 207  Q
    |||||||| |||||    
T  31917 cctcgacaactaat 31904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 22790093 - 22790196
Alignment:
Q  74 gactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattc 173  Q
    ||||| |||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||    
T  22790093 gactaatgtctcacttaagaataatagaaccggattgaagtgccgaactaggtactttaaatcagaaattgcactcgggctacctaaacccctgcaattc 22790192  T
Q  174 caac 177  Q
    ||||    
T  22790193 caac 22790196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 22288525 - 22288426
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |  ||  |||||| | |||||||||||| |||||  ||||||||    
T  22288525 ctagagtctcacttaaaaataaaaggtccggattgaaatgccgaactaggtacttaaggtcgggaattgtactcgggctacctacaccccgacaattcca 22288426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 8866222 - 8866331
Alignment:
Q  74 gactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattc 173  Q
    |||||||||||| ||||| ||||  |||||| |||||||||||||||| ||||| || || ||  ||||||| || ||||||||||| ||||  ||||||    
T  8866222 gactagtgtctcacttaaaaatagtaggtcctgattgaagtgccgaaccaggtatttcaagtccggaattgcgttagggctacctaagccccgacaattc 8866321  T
Q  174 caacttatca 183  Q
    ||||| ||||    
T  8866322 caactgatca 8866331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 3209003 - 3209102
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| |||| |||||| |  ||||||||||||||||| ||||||||||| | |||  ||||||   |||||||||||| |||||  ||||||||    
T  3209003 ctagagtctcacttatgaataaaatatccggattgaagtgccggactaggtacttaagatcaggaattgtgctcgggctacctataccccgacaattcca 3209102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 15994416 - 15994500
Alignment:
Q  81 gtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccc 165  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||| || |  ||| |||||||| |||||||||||| |||||    
T  15994416 gtctcacttaaaaataaaaggtccggattgaaatgccgaactaggtatttaaggtctggaattgcactcgggctacctacacccc 15994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 14501869 - 14501770
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| ||||| ||||| |||| | ||||||| ||||||||||||||||| |  ||  |||||||| |||||||||||| |||||  ||||||||    
T  14501869 ctagagtctcacttaaaaataaaaggttcagattgaaatgccgaactaggtacttaaggtcgggaattgcactcgggctacctacaccccgacaattcca 14501770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 29383252 - 29383116
Alignment:
Q  28 aatcaaagccgagcaaagatcgtaaatcgtcaattttagttagggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggta 127  Q
    ||||||| || |||||| | |||||||| ||||||||| || ||  |||||||||||| ||||| ||||  ||||||  ||||||||  ||||| |||||    
T  29383252 aatcaaaacccagcaaataacgtaaatcttcaattttatttcggtggactagtgtctcacttaaaaatagtaggtccatattgaagtatcgaacgaggta 29383153  T
Q  128 ctttaaatctagaattgcattcgggctacctaaacccc 165  Q
     || || ||  ||||||||  | |||||||||||||||    
T  29383152 tttcaagtcgggaattgca-cccggctacctaaacccc 29383116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 4050 - 3951
Alignment:
Q  76 ctagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattcca 175  Q
    |||| ||||| |||||||| |  || ||||||||||||||||| ||||||||||| |  ||| |||||||| |||||||||||| ||||  |||||||||    
T  4050 ctagagtctcacttaagaaaagaagatccggattgaagtgccggactaggtacttaaggtctggaattgcactcgggctacctacaccctggcaattcca 3951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 41327677 - 41327550
Alignment:
Q  48 cgtaaatcgtcaattttagttagggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcat 147  Q
    |||||||| ||||||||| || ||  ||||| | |||| |||||||| | ||||||||||||||||||  |||||||||| ||||  ||   ||||||      
T  41327677 cgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtattttaggtcagcaattgcgc 41327578  T
Q  148 tcgggctacctaaacccctgcaattcca 175  Q
    ||| |||||||||||||| |||||||||    
T  41327577 tcgagctacctaaaccccggcaattcca 41327550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 41337908 - 41337824
Alignment:
Q  48 cgtaaatcgtcaattttagttagggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtacttta 132  Q
    |||||||| ||||||||| || ||  ||||| | |||| |||||||| | ||||||||||||||||||  |||||||||| ||||    
T  41337908 cgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtatttta 41337824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 45010048 - 45009939
Alignment:
Q  81 gtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattccaactta 180  Q
    ||||| |||||||| | || ||||||||| |||||||||| |||||| || || ||  |||||||  |||||||||||||| |||  |||||||||||||    
T  45010048 gtctcacttaagaagaggatgtccggattaaagtgccgaattaggtatttcaagtcgggaattgcgctcgggctacctaaa-cccgacaattccaactta 45009950  T
Q  181 tcaggctcatt 191  Q
    |||| ||||||    
T  45009949 tcagactcatt 45009939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3115 times since January 2019
Visitors: 6169