View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_low_6 (Length: 520)
Name: NF0849_low_6
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 47353650 - 47353872
Alignment:
| Q |
187 |
ttggtagtgcttatggtagcaggtatcggttgtcaaggatcacatttcaaggagtggaatttgatagtaaggagaaaagtgatagcatggagttgtcaaa |
286 |
Q |
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| T |
47353650 |
ttggtagtgcttatggtagcaggtatcggttgtcaaggatcacatttcaaggagtggaatttgatagtaaggagaaaagtgatagcatggagttgtcaaa |
47353749 |
T |
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| Q |
287 |
atccagtccagaagtaagaaattcacgataggatctgtgtcattgcaccttcaagttaatgtagattgctacctattactagtctgccatgaacagggtt |
386 |
Q |
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| T |
47353750 |
atccagtccagaagtaagaaattcacgataggatctgtgtcattgcaccttcaagttaatgtagattgctacctattactggtctgccatgaacagggtt |
47353849 |
T |
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| Q |
387 |
gcatggccctatgcctatggaca |
409 |
Q |
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| T |
47353850 |
gcatggccctatgcctatggaca |
47353872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 47353469 - 47353629
Alignment:
| Q |
30 |
tggaaagaatcaataatttattggataggtttccttaattcccctaggtccccactgtaaccacaaaatgactattatttgtaaggttcaaagtttattt |
129 |
Q |
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| T |
47353469 |
tggaaagaatcaataatttattggataggtttccttaattcccctaggtccccactgtaaccacaaaatgactattatttgtaaggttcaaagtttattt |
47353568 |
T |
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| Q |
130 |
taacatttcatatcaataaatatgttcaatttcattttgaaggtggaggctgtggtgttgg |
190 |
Q |
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| T |
47353569 |
taacatttcatatcaataaatatgttcaatttcattttgaaggtggaggctgtggtgttgg |
47353629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 404 - 506
Target Start/End: Complemental strand, 3779431 - 3779326
Alignment:
| Q |
404 |
tggacaaaaccttttagtg---gctactctaaaatgaaaagaaggaaggcacggcaatagtcactcgtaaaccgcagcaacaggaagaaatagaacagca |
500 |
Q |
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| T |
3779431 |
tggacaaaacctgttagtgatggctactctaaaatgaaaagaaggaaggcacggcaatagtcactcgtaaaccgcagcaacaggaagaaatagaacagca |
3779332 |
T |
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| Q |
501 |
gcaaca |
506 |
Q |
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|||||| |
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| T |
3779331 |
gcaaca |
3779326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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