View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0849_low_8 (Length: 424)
Name: NF0849_low_8
Description: NF0849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0849_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 29 - 362
Target Start/End: Complemental strand, 50421240 - 50420902
Alignment:
| Q |
29 |
aaatcatgtatacatctaaaaacaagtatgttggattaaacgattaaggtttatgcgaggaaacctctcagccgatggaaggttatgagaaggctaaaac |
128 |
Q |
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| T |
50421240 |
aaatcatgtatacatctaaaaacaagtatgttggat-aaacgattaaggtttatgcgaggaaacctctcagccgatggaaggttatgagaaggctaaaac |
50421142 |
T |
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| Q |
129 |
aaccaagtgtgaaaattggannnnnnnn-ctcaagtctagtgattgattacgtgggtatcagagatctcaaaccgagtcaaaactt-----gacaacaca |
222 |
Q |
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| T |
50421141 |
aaccgagtgtgaaaattggatttttttttctcaggtctagtgactgattacgtgggtatcaaagatctcaaaccgagtcaaaacttaataggacaacaca |
50421042 |
T |
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| Q |
223 |
atgatgcttgaaactcacgcaccacattcatactaaacacaagacggtgaaagaggaattacgtttgcgggggagctgtgtatccaagaccttgtcaaaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
50421041 |
atgatgcttgaaactcacgcaccacattcatactaaacacaagacggtgaaagaggaattacgtttgcgggggagctgtgtaccgaagaccttgtcaaaa |
50420942 |
T |
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| Q |
323 |
tttaaaggcttaatagcaattttggcctcctgagtattat |
362 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| |
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| T |
50420941 |
tttaaaggcttaatagcagttttggcctcctaagtattat |
50420902 |
T |
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