View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0850_high_1 (Length: 312)
Name: NF0850_high_1
Description: NF0850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0850_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 36001802 - 36001545
Alignment:
| Q |
1 |
cctcatccatgtggcaaaatagaaaactgactcatctcaatctaagtaaatgtaagaagcttaacattgctgagaagaatttaccaaacgatccaggatt |
100 |
Q |
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| T |
36001802 |
cctcatccatgtggcgtaatagaaaactgactcatctcaatctaagtaaatgtaagaagcttaacattgctgagaagaatttaccaaacgatccaggatt |
36001703 |
T |
|
| Q |
101 |
ggagtctcttatattttgtgacctgtcaggatgcactcaaatcaacacatggaatctgtggttcatatttcattccatacgatctgtaaaacacctaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36001702 |
ggagtctcttatattttgtgacctgtcaggatgcactcaaatcaacacatggaatctgtggttcatatttcatttcatacgatctgtaaaacacctaagg |
36001603 |
T |
|
| Q |
201 |
atggtaaactgctgcaacttagaaagtctccctgacaacatccaaaacatttcaatgt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36001602 |
atggtaaactgctgcaacttagaaagtctccctgacaacatccaaaacatttcaatgt |
36001545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 12897750 - 12897968
Alignment:
| Q |
40 |
atctaagtaaatgtaagaagcttaacattgctgagaagaatttaccaaacgatccaggattggagtctcttatattttgtgacctgtcaggatgcactca |
139 |
Q |
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|||||||| ||||||||||||||||||||| || |||||| ||| |||| ||||||||||||||||| |||| | ||| ||||| || |||||||| || |
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| T |
12897750 |
atctaagtgaatgtaagaagcttaacattgttgggaagaagttaacaaatgatccaggattggagtcacttacagttttggacctttcgggatgcacaca |
12897849 |
T |
|
| Q |
140 |
aatcaacacatggaatctgtggttcatatttcattccatacgatctgtaaaacacctaaggatggtaaactgctgcaacttagaaagtctccctgacaac |
239 |
Q |
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|||||| |||| ||| ||||||||||| || | ||||| |||| |||||| ||| || ||| |||||||||||||||| |||||| ||||| |
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| T |
12897850 |
aatcaatacatcgaacctgtggttcatccttgacggcatacaatctttaaaacgattaaatttgagaaaatgctgcaacttagaaactctccccaacaac |
12897949 |
T |
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| Q |
240 |
atccaaaacatttcaatgt |
258 |
Q |
| |
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||||||| || |||||||| |
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| T |
12897950 |
atccaaagcaattcaatgt |
12897968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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