View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0850_low_2 (Length: 466)
Name: NF0850_low_2
Description: NF0850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0850_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 120 - 323
Target Start/End: Complemental strand, 39305031 - 39304828
Alignment:
| Q |
120 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgcggtcgtaattgtttttgaatcgaatttggagag |
219 |
Q |
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| T |
39305031 |
ccaaacataaaattagcttggtcttactcattcataccaatgccctatggaatcaatctgatcttgctgtcgtaattgtttttgaatcgaatttggagag |
39304932 |
T |
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| Q |
220 |
aaaggaagtggaaatggttgatcagtagtcatataaggaggttgagacatgagatttgtagatgtatatacactattgttgaaatgttgattatttaatt |
319 |
Q |
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| T |
39304931 |
aaaggaagtggaaatggttgatcagtagtcatataaggagtttgagacatgagatttgtagatgtatatacactattgttgaaatgttgattatttaatt |
39304832 |
T |
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| Q |
320 |
catc |
323 |
Q |
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|||| |
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| T |
39304831 |
catc |
39304828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 39304771 - 39304703
Alignment:
| Q |
386 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatatt |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304771 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatatt |
39304703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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