View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0850_low_6 (Length: 298)
Name: NF0850_low_6
Description: NF0850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0850_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 29 - 295
Target Start/End: Complemental strand, 280317 - 280051
Alignment:
| Q |
29 |
agaaccaatggtaattgtttggatagacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaat |
128 |
Q |
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| T |
280317 |
agaaccaatggtaattgtttggacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaat |
280218 |
T |
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| Q |
129 |
gaccttggcacatggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgcatc |
228 |
Q |
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| T |
280217 |
gaccttggcacatggtaaaacctttgagatggttctccacaaccactcaaacatttatcagcattatattctcctctataatcacatgtgtcactgcatc |
280118 |
T |
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| Q |
229 |
ctttattttcagcaagcattgcaggccaataccttccaatactttgaccattaacctatgctactcc |
295 |
Q |
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| T |
280117 |
ctttattttcagcaagcattgcaggccaataccttccaatactttgaccattaacccatgcttctcc |
280051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 290657 - 290571
Alignment:
| Q |
53 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
139 |
Q |
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| T |
290657 |
agacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac |
290571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 24525709 - 24525623
Alignment:
| Q |
53 |
agacgcattgaaaggggttgcaccaaaacccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
139 |
Q |
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| T |
24525709 |
agacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24525623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 24532354 - 24532295
Alignment:
| Q |
80 |
acccatttcctcaaacaaaaccaacgtgtttacatcgatatttaagaatgaccttggcac |
139 |
Q |
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||||| |||||||||||| ||||| ||||||||||| |||| ||||||| ||||||||| |
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| T |
24532354 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
24532295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 24525586 - 24525553
Alignment:
| Q |
257 |
ataccttccaatactttgaccattaacctatgct |
290 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
24525586 |
ataccttccaatactttgaccattaacccatgct |
24525553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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