View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851-INSERTION-12 (Length: 186)

Name: NF0851-INSERTION-12
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851-INSERTION-12
NF0851-INSERTION-12
[»] chr3 (19 HSPs)
chr3 (7-176)||(24839322-24839491)
chr3 (10-176)||(19854101-19854267)
chr3 (20-176)||(19858673-19858829)
chr3 (10-98)||(19948503-19948591)
chr3 (72-176)||(19819161-19819265)
chr3 (64-176)||(19956685-19956797)
chr3 (20-174)||(26647607-26647761)
chr3 (72-176)||(19832471-19832575)
chr3 (64-176)||(19838994-19839106)
chr3 (18-176)||(19951725-19951883)
chr3 (72-176)||(26653749-26653853)
chr3 (72-176)||(19812884-19812988)
chr3 (124-176)||(19944318-19944370)
chr3 (74-168)||(20015616-20015710)
chr3 (72-176)||(20033747-20033851)
chr3 (72-176)||(20036016-20036120)
chr3 (64-176)||(19849597-19849709)
chr3 (97-176)||(19990126-19990205)
chr3 (115-174)||(20046723-20046782)
[»] chr2 (1 HSPs)
chr2 (10-176)||(39191327-39191493)
[»] chr8 (4 HSPs)
chr8 (10-176)||(11544671-11544837)
chr8 (10-176)||(22689021-22689190)
chr8 (37-180)||(22655694-22655837)
chr8 (30-138)||(11563794-11563902)
[»] chr1 (1 HSPs)
chr1 (21-174)||(1717823-1717976)
[»] chr5 (3 HSPs)
chr5 (77-168)||(26354345-26354436)
chr5 (77-168)||(9815643-9815734)
chr5 (77-176)||(38435007-38435106)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 24839322 - 24839491
Alignment:
Q  7 tgaggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24839322 tgaggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcagataagggtctggagtaatttttccaagcaatggctttagtctcattg 24839421  T
Q  107 agtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24839422 agtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcaactctatgtggtagatatt 24839491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 19854267 - 19854101
Alignment:
Q  10 ggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagt 109  Q
    ||||| |||||| | |||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||| |||||||||||||    
T  19854267 ggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtctcattgagt 19854168  T
Q  110 ctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    || |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  19854167 ctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt 19854101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 19858829 - 19858673
Alignment:
Q  20 gcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacat 119  Q
    ||||||||| |||||||| |||| ||||||||||||||  | |||||||||||||||||||||||||||||| ||| ||  ||||||| |||||||||||    
T  19858829 gcctcaaaaaatctagattgaaagtataaacttgtatcataaaagggtctggagtaatttttccaagcaatgacttgagattcattgaatctagacacat 19858730  T
Q  120 aaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  19858729 aaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatatt 19858673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 19948591 - 19948503
Alignment:
Q  10 ggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttag 98  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  19948591 ggtaataccagcctcaaaaaatttagatggaaaatataaacttctatcagataagggtctggagtaatttttccaagcaatggctttag 19948503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 19819265 - 19819161
Alignment:
Q  72 agtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtag 171  Q
    |||| |||||||||||||||  ||||||||||||||  |||| |||||||||||||||||||||||||| ||| || ||||||||| |||||||||| ||    
T  19819265 agtagtttttccaagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaag 19819166  T
Q  172 atatt 176  Q
    |||||    
T  19819165 atatt 19819161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 19956797 - 19956685
Alignment:
Q  64 gggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctcta 163  Q
    ||||||| |||| |||||||||||||||  ||||||||||||||  ||||  |||||||| |||||||||||||||| ||| |||||||||||| |||||    
T  19956797 gggtctgcagtagtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactcta 19956698  T
Q  164 tgtggtagatatt 176  Q
    ||||| |||||||    
T  19956697 tgtggaagatatt 19956685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 26647761 - 26647607
Alignment:
Q  20 gcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacat 119  Q
    ||||||||| |||| ||||| ||||| |||||  |||| |||| | ||||  |||| ||||||||||||||| ||||||||||||||| || || |||||    
T  26647761 gcctcaaaaaatctcgatgggaaatacaaactcctatcagatatgcgtctacagtagtttttccaagcaatgtctttagtctcattgaatcgaggcacat 26647662  T
Q  120 aaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagata 174  Q
     ||  |||||||||||||| | ||| |||||||||||| |||||||||| |||||    
T  26647661 cactcggaacatcttgatccattccaaattgcatagcaactctatgtggcagata 26647607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 19832575 - 19832471
Alignment:
Q  72 agtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtag 171  Q
    |||| |||||||||||||||  ||||||||||||||  |||| |||||||||||||||||||||||||| ||| |  ||||||||| |||||||||| ||    
T  19832575 agtagtttttccaagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaag 19832476  T
Q  172 atatt 176  Q
    |||||    
T  19832475 atatt 19832471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 19839106 - 19838994
Alignment:
Q  64 gggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctcta 163  Q
    ||||||| | || |||||||||||||||  ||||||| ||||||  |||| ||||||||| |||||||||||||| | |||||||||||||||| |||||    
T  19839106 gggtctgcaatagtttttccaagcaatgtatttagtcacattgaacctagccacataacctggaacatcttgatccattccgaattgcatagcaactcta 19839007  T
Q  164 tgtggtagatatt 176  Q
    ||||| |||||||    
T  19839006 tgtggaagatatt 19838994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 19951883 - 19951725
Alignment:
Q  18 cagcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacac 117  Q
    |||||||||||  | | ||||||||||| ||| || |||| |||| ||| ||| |||| ||||||||||||||  ||||||| | |||||  |||| |||    
T  19951883 cagcctcaaaaatttttgatggaaaatacaaatttttatcagatatgggcctgcagtagtttttccaagcaatcactttagttttattgaacctaggcac 19951784  T
Q  118 ataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    |||||  |||||||||||||| | | | |||||||||||| |||||||||| |||||||    
T  19951783 ataactcggaacatcttgatccattgcaaattgcatagcaactctatgtggaagatatt 19951725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 26653853 - 26653749
Alignment:
Q  72 agtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtag 171  Q
    |||| |||| ||||||||||  ||||||||||||||  |||| ||||||||  ||||||||||| |||| ||| |||||||||||| |||||||||| ||    
T  26653853 agtagttttcccaagcaatgtatttagtctcattgaacctagccacataacttggaacatcttggtcaattccaaattgcatagcaactctatgtggaag 26653754  T
Q  172 atatt 176  Q
    |||||    
T  26653753 atatt 26653749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 19812988 - 19812884
Alignment:
Q  72 agtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtag 171  Q
    |||| |||||||| |||||  ||||||| | |||||  |||| ||||||||  |||||||||||||||| ||| |||||||||||| |||||||||| ||    
T  19812988 agtagtttttccatgcaatcactttagttttattgaacctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactctatgtggaag 19812889  T
Q  172 atatt 176  Q
    |||||    
T  19812888 atatt 19812884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 19944370 - 19944318
Alignment:
Q  124 aggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  19944370 aggaacatcttgatcaaatccgaattgcatagcaactctatatggtagatatt 19944318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 20015616 - 20015710
Alignment:
Q  74 taatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtgg 168  Q
    |||| |||||||||| ||  |||||||||||||| ||||| ||||| ||| |||||||||||||| | ||| |||||||||||| |||| |||||    
T  20015616 taatatttccaagcagtgattttagtctcattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtgg 20015710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 20033747 - 20033851
Alignment:
Q  72 agtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtag 171  Q
    |||| ||| |||||||| |  |||||||||| ||||  |||| ||||||||  |||||||||||||| | ||| |||||||||||| |||||||||| ||    
T  20033747 agtagtttctccaagcattctctttagtctcgttgaacctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggaag 20033846  T
Q  172 atatt 176  Q
    |||||    
T  20033847 atatt 20033851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 20036016 - 20036120
Alignment:
Q  72 agtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtag 171  Q
    |||| ||| ||||||||||  ||||||| | ||||   |||| ||| ||||  |||||||||||||||| ||| |||||||||||| |||||||||| ||    
T  20036016 agtagtttctccaagcaatcactttagttttattgcacctagccacgtaactcggaacatcttgatcaattccaaattgcatagcaactctatgtggaag 20036115  T
Q  172 atatt 176  Q
    |||||    
T  20036116 atatt 20036120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 19849709 - 19849597
Alignment:
Q  64 gggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctcta 163  Q
    ||||||| | || |||| |||||||||| ||||||| ||||| |  || | ||||||||  |||||||||||||| | ||||||||||| ||   |||||    
T  19849709 gggtctgcaatagttttgccaagcaatgtctttagtatcatttaacctcggcacataacttggaacatcttgatccattccgaattgcaaagagactcta 19849610  T
Q  164 tgtggtagatatt 176  Q
    ||||| |||||||    
T  19849609 tgtgggagatatt 19849597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 19990205 - 19990126
Alignment:
Q  97 agtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    |||||||||||  |||| ||| ||||  |||| ||||||||| | ||| ||||||| |||| |||||||||| |||||||    
T  19990205 agtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgggagatatt 19990126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 20046782 - 20046723
Alignment:
Q  115 cacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagata 174  Q
    ||||||||  ||||||||||| |||| ||| |||||||||| | |||||||||| |||||    
T  20046782 cacataactcggaacatcttggtcaagtccaaattgcatagaaactctatgtggaagata 20046723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 39191327 - 39191493
Alignment:
Q  10 ggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagt 109  Q
    ||||| ||| || |||||| ||||||||||||  ||||||||||| || |||||||||||| ||||||||||||||||||||| || ||||||||||| |    
T  39191327 ggtaacaccggcatcaaaaaatctagatggaatgtataaacttgtttcagataagggtctgcagtaatttttccaagcaatggtttcagtctcattgaat 39191426  T
Q  110 ctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    |||| |||| || | |||||||||||||| | ||| |||||||||||| |||||||||| |||||||    
T  39191427 ctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatatt 39191493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 9e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 11544837 - 11544671
Alignment:
Q  10 ggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagt 109  Q
    ||||| ||| || |||||| ||||||||||||   ||||||||| ||| |||||||||||| ||||||||||||||||||||| || | ||||||||| |    
T  11544837 ggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcatcagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaat 11544738  T
Q  110 ctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    |||| |||| || | |||||||||||||| | ||| |||||||||||| |||||||||| |||||||    
T  11544737 ctaggcacacaagctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatatt 11544671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 22689021 - 22689190
Alignment:
Q  10 ggtaataccagcctcaaaatatctagatggaaaata---taaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattg 106  Q
    ||||| ||||||||  ||| |||| |||||||||||   |||||||||||| || || |||||| | ||||||| |||||||||||| |||||||   ||    
T  22689021 ggtaacaccagccttgaaaaatctggatggaaaataatataaacttgtatcagaaaaaggtctgcaataattttcccaagcaatggcattagtctttctg 22689120  T
Q  107 agtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    | |||||| ||||||||||||||||||||||| | ||| || ||| ||||| ||||||||||||||||||    
T  22689121 aatctagagacataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatatt 22689190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 22655694 - 22655837
Alignment:
Q  37 tggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttga 136  Q
    ||||||||| ||  || |||| |||| ||||||| |||| |||||||||||||||  ||||||||||||||  ||||  |||||||| ||||||||||||    
T  22655694 tggaaaatacaagtttttatcagatatgggtctgcagtagtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttga 22655793  T
Q  137 tcaaatccgaattgcatagcacctctatgtggtagatatttttc 180  Q
    |||| ||| |||||||||| | ||||| |||| |||||||||||    
T  22655794 tcaattccaaattgcatagaaactctacgtggaagatatttttc 22655837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 11563794 - 11563902
Alignment:
Q  30 atctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaac 129  Q
    ||||||||||||   ||||||||| ||| |||||||||||| ||||||||||||||||||||| || | ||||||||| ||||| |||| || | |||||    
T  11563794 atctagatggaatgaataaacttgcatcagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaac 11563893  T
Q  130 atcttgatc 138  Q
    |||||||||    
T  11563894 atcttgatc 11563902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 1717976 - 1717823
Alignment:
Q  21 cctcaaaatatctagatggaaaatataaacttgtatcggataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacata 120  Q
    |||||||| |||| ||||||||||| |   || |||| |||| ||| ||| |||| | |||||||||||||| ||||| |||||||| ||||| |||||     
T  1717976 cctcaaaaaatctcgatggaaaatacatttttttatcagatatgggcctgcagtagtgtttccaagcaatggatttagcctcattgaatctaggcacatc 1717877  T
Q  121 accaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagata 174  Q
    ||  |||||||||||||| | ||| |||||||||||| |||||||||| |||||    
T  1717876 acttggaacatcttgatccattccaaattgcatagcaactctatgtggcagata 1717823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 26354345 - 26354436
Alignment:
Q  77 tttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtgg 168  Q
    |||||||||||||||  |||||||||||| | ||||| ||||||||  |||||||||||||| | ||| |||||||||||| ||||||||||    
T  26354345 tttttccaagcaatgaatttagtctcattaaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtgg 26354436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 9815734 - 9815643
Alignment:
Q  77 tttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtgg 168  Q
    ||||||||||| |||  |||||||||||||| ||||| |||||||   |||||||||||||| | | | |||||||||||| ||||||||||    
T  9815734 tttttccaagccatgagtttagtctcattgaatctaggcacataagttggaacatcttgatccatttcaaattgcatagcaactctatgtgg 9815643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 38435007 - 38435106
Alignment:
Q  77 tttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcacctctatgtggtagatatt 176  Q
    |||||| ||||||| | |||||||||||| |  |||  ||||||||  |||||||||||||||| ||  |||| ||||||| ||||||||||||||||||    
T  38435007 tttttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctctatgtggtagatatt 38435106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 106 times since January 2019
Visitors: 6125