View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851-INSERTION-4 (Length: 233)
Name: NF0851-INSERTION-4
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851-INSERTION-4 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 2149929 - 2149716
Alignment:
| Q |
7 |
acaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgt |
106 |
Q |
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| T |
2149929 |
acaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgt |
2149830 |
T |
|
| Q |
107 |
ttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattttata |
206 |
Q |
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| T |
2149829 |
ttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattttata |
2149730 |
T |
|
| Q |
207 |
tcaatcttcattat |
220 |
Q |
| |
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|||||||||||||| |
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| T |
2149729 |
tcaatcttcattat |
2149716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 2145454 - 2145242
Alignment:
| Q |
7 |
acaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgt |
106 |
Q |
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| T |
2145454 |
acaatgtttgttccatatgtcttggtgagtacaaacccatggagacattaaggagtatacctcaatgtaatcatcatttccatgcagattgtatagatgt |
2145355 |
T |
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| Q |
107 |
ttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattttata |
206 |
Q |
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| T |
2145354 |
ttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttggtt-atctctttgtgcatctctctacaattttata |
2145256 |
T |
|
| Q |
207 |
tcaatcttcattat |
220 |
Q |
| |
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|||||||||||||| |
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| T |
2145255 |
tcaatcttcattat |
2145242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 2140920 - 2140712
Alignment:
| Q |
7 |
acaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140920 |
acaatgtttgttccatatgtcttagtgagtacaaaccaatggagacattaagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgt |
2140821 |
T |
|
| Q |
107 |
ttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattttata |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| | |||||||||| ||||||||||| |||||| |
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| T |
2140820 |
ttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgagtgatgcacgtgctttggtt-atctctttgtgcctctttctacaa-tttata |
2140723 |
T |
|
| Q |
207 |
tcaatcttcat |
217 |
Q |
| |
|
||||||||||| |
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|
| T |
2140722 |
tcaatcttcat |
2140712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 42003993 - 42004054
Alignment:
| Q |
94 |
attgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
155 |
Q |
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| T |
42003993 |
attgtatagatggatggctcaagacaaatgctacctgccctttgtgtcgaaattttccagag |
42004054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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