View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851-INSERTION-6 (Length: 360)
Name: NF0851-INSERTION-6
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851-INSERTION-6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 52592777 - 52592424
Alignment:
| Q |
7 |
actaatgccatctttatgtttttggccttgtttaataacttaggtaatcttccccacctccaaaaaccgtattttgtattccataataatcataatgtgc |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592777 |
actaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccgaaaaccgtattttgtattccataataatcataatgtgc |
52592678 |
T |
|
| Q |
107 |
ttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccattgaaaaagatatcaagctgatttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592677 |
ttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccattgaaaaagatatcaagctgatttc |
52592578 |
T |
|
| Q |
207 |
attgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcccaaccaagcattctcttcagggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592577 |
attgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcccaaccaagcattctcttcagggt |
52592478 |
T |
|
| Q |
307 |
cctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592477 |
cctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatg |
52592424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 331 times since January 2019
Visitors: 6128