View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851_high_1 (Length: 1082)
Name: NF0851_high_1
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 65 - 598
Target Start/End: Original strand, 29841020 - 29841558
Alignment:
| Q |
65 |
tcattgagaattatcatgacagtggtttcttata-----ctatactataatgccggtcttgtgctgtattatggtccatctaacttgcagtcatgatgca |
159 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841020 |
tcattgagaattatcatgacagtggtttcttatactatactatactataatgccggtcttgtgctgtattatggtccatctaacttgcagtcatgatgca |
29841119 |
T |
|
| Q |
160 |
gaaatccaccactttgggggaccatgaaatatctctctgaaaaaattcctaaggatacttcaagcaaggtgcgaataaaccgcgatctatacactcacga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
29841120 |
gaaatccaccactttgggggaccatgaaatatctctctgaaaaaattcctaaggatacttcaagcaaggtgcgaataaaccgtgatctatacactcacga |
29841219 |
T |
|
| Q |
260 |
aaggtaaattttcccgatttcatgactaaccttgttacctaactgcaatttaataatcattcttgtggtgaatgaaaaagaagaggactaatgaaaacaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29841220 |
aaggtaaattttcccgatttcatgactaaccttgtttcctaactgcaatttaataatcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaa |
29841319 |
T |
|
| Q |
360 |
tattttatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggact |
459 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841320 |
tattttatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggact |
29841419 |
T |
|
| Q |
460 |
cttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841420 |
cttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaa |
29841519 |
T |
|
| Q |
560 |
atgttgactttcttgaaaggtgtaagtcaaagaatggtg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29841520 |
atgttgactttcttgaaaggtgtaagtcaaagaagggtg |
29841558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 107 - 598
Target Start/End: Complemental strand, 29830471 - 29829977
Alignment:
| Q |
107 |
taatgccggtcttgtgctgtattatggtccatctaacttgcagtcatgatgcagaaatccaccactttgggggaccatgaaatatctctctgaaaaaa-t |
205 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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|
| T |
29830471 |
taatgccggtctcgtgctgtattatggcccatctaacttgcagtcatgatgcagaaatccaccactttgggggaccatgaaatatctttctgaaaaaaat |
29830372 |
T |
|
| Q |
206 |
tcctaaggatacttcaagcaaggtgcgaataaaccgcgatctatacactcacgaaaggtaaattttcccgatttcatgactaaccttgttacctaactgc |
305 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| || ||| |||| ||| |
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|
| T |
29830371 |
tcccaaggatacttcaagcaaggtgcgaataaaccgcgatctgtacacccacgaaaggtaaattttccagagttcatgactaatctggtttcctatttgc |
29830272 |
T |
|
| Q |
306 |
aatttaataatcattcttgtggtgaatgaaaaagaagaggactaatgaaaacaatattt-tatattttataacaggatcatggagacagctccaacattg |
404 |
Q |
| |
|
||| | || ||||||||||| || ||||||||||| |||||||| | || ||||| | | ||||||| ||||||||||||||||||||||||| ||| |
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|
| T |
29830271 |
aatctgatgatcattcttgtagtacatgaaaaagaaaaggactaacgtaagcaatactgctgtattttacgacaggatcatggagacagctccaactttg |
29830172 |
T |
|
| Q |
405 |
cctgaattttccttggcattgaaaccagatgaataccaacttccactagtgg-actcttcttggagaacagaaaacataaaagtgacacaaactcattct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| || ||||||||| ||||||||||||||||| |
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|
| T |
29830171 |
cctgaattttccttggcattgaaaccagatgaatatcaacttccaccagtgggactcttcttggagaactgagaacataaaattgacacaaactcattct |
29830072 |
T |
|
| Q |
504 |
aaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaagtcaaagaatggtg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
29830071 |
aaccatctcaatggtgacaaatgatcaaatactaggaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgcaagtcaaagaagggtg |
29829977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 661 - 950
Target Start/End: Original strand, 29841621 - 29841911
Alignment:
| Q |
661 |
gatcacataattcaaagataccttgaaagtagagcttccattggctttaataaaaatttgacactcagggaaaaagaaaggggatccttcccaatatata |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29841621 |
gatcacataattcaaagataccttgaaagtagagcttccattggctttaatgaaaatttgacactcaaggaaaaagaaaggggatccttcccaatatata |
29841720 |
T |
|
| Q |
761 |
ccaataaa-taaagacagttacatcattgatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtata |
859 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29841721 |
ccaataaaataaagacagttacatcattcatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtata |
29841820 |
T |
|
| Q |
860 |
atacaagcgcaaagtgtgtaaagaaaaacctatgtattttcactaagaggtggttttgtgattgaatggaatattcggaatgttgatcatc |
950 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29841821 |
atacaagcacaaagtgtgtaaagaaaaacctatgtattttcacgaagaggtggttttgtgattgaatgaaatattcggaatgttgatcatc |
29841911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 664 - 950
Target Start/End: Complemental strand, 29829861 - 29829573
Alignment:
| Q |
664 |
cacataattcaaagataccttgaaagtagagcttccattggctttaataaaaatttgacactcagggaaaaagaaaggggatccttcccaatatatacca |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
29829861 |
cacataattcaaagataccttgaaagtagaacttccattggctttaatgaaaatttgacactcaaggaaaaggaaaggggatccttctcaatatatacca |
29829762 |
T |
|
| Q |
764 |
ataaataaagacagttacatcattgatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtataatac |
863 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||| |
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|
| T |
29829761 |
ataaataaagtcagttacatcattcatttaatatacagaatttttgcaagtggttgtgtgtaaaattgacctgtgcattggggtgaaacaagtataatac |
29829662 |
T |
|
| Q |
864 |
aagcgcaaagtgtgt--aaagaaaaacctatgtattttcactaagaggtggttttgtgattgaatggaatattcggaatgttgatcatc |
950 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
29829661 |
aagcacaaagtgtgtggaaaaaaaaacctatgtattttcaccaagagttggttttgtggttgaatggaatattcagaatgttgatcatc |
29829573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 948 - 1038
Target Start/End: Original strand, 29841964 - 29842054
Alignment:
| Q |
948 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatatgaattgatttcatatacctaacctctgcatggagccattca |
1038 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29841964 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgatttcatatacctaacctctgcatggagccattca |
29842054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 948 - 1010
Target Start/End: Complemental strand, 29829509 - 29829447
Alignment:
| Q |
948 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatatgaattgatttcat |
1010 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
29829509 |
atcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatttcat |
29829447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 34624012 - 34623877
Alignment:
| Q |
133 |
gtccatctaacttgcagtcatgatgcagaaatccaccactttgggggaccatgaaatatctctctgaaaaaattcctaaggatacttcaagcaaggtgcg |
232 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
34624012 |
gtccacctaacatgcagtcatgatgcagaaatccaccgctttgggggaccatgaaatatctctctgagaaaattcccaaggatacttcaagcaaggtgcg |
34623913 |
T |
|
| Q |
233 |
aataaaccgcgatctatacactcacgaaaggtaaat |
268 |
Q |
| |
|
||||||||| |||||||| ||| |||| |||||||| |
|
|
| T |
34623912 |
aataaaccgtgatctatatacttacgagaggtaaat |
34623877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 370 - 478
Target Start/End: Complemental strand, 34623750 - 34623642
Alignment:
| Q |
370 |
tttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggactcttcttggag |
469 |
Q |
| |
|
||||| |||| |||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||| || |||||||||| |||| |||||||||| |
|
|
| T |
34623750 |
tttattacagaatcatggaaacagcaccaacattgcctgattttgccttggccttgaaaccagatgattatcaacttccacaagtgagtccttcttggag |
34623651 |
T |
|
| Q |
470 |
aacagaaaa |
478 |
Q |
| |
|
||||||||| |
|
|
| T |
34623650 |
aacagaaaa |
34623642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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