View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851_high_10 (Length: 436)

Name: NF0851_high_10
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851_high_10
NF0851_high_10
[»] scaffold0316 (2 HSPs)
scaffold0316 (29-272)||(6742-6986)
scaffold0316 (372-427)||(7086-7141)
[»] chr6 (2 HSPs)
chr6 (28-272)||(11973968-11974212)
chr6 (372-427)||(11973812-11973867)
[»] scaffold0003 (4 HSPs)
scaffold0003 (31-206)||(191556-191739)
scaffold0003 (48-133)||(181753-181838)
scaffold0003 (238-272)||(191774-191808)
scaffold0003 (48-133)||(188693-188778)
[»] chr3 (3 HSPs)
chr3 (34-206)||(11818539-11818721)
chr3 (43-206)||(41758299-41758458)
chr3 (48-133)||(11374545-11374630)
[»] chr8 (4 HSPs)
chr8 (43-206)||(33856317-33856476)
chr8 (43-206)||(14106556-14106725)
chr8 (146-214)||(7781791-7781860)
chr8 (146-214)||(7831065-7831134)
[»] chr4 (4 HSPs)
chr4 (43-206)||(31926593-31926752)
chr4 (70-133)||(37525368-37525431)
chr4 (64-134)||(14289268-14289338)
chr4 (146-214)||(37525278-37525347)
[»] chr5 (5 HSPs)
chr5 (70-133)||(2255887-2255950)
chr5 (146-214)||(2255797-2255866)
chr5 (48-133)||(3695859-3695944)
chr5 (48-133)||(3698221-3698306)
chr5 (48-133)||(3870844-3870929)
[»] chr1 (3 HSPs)
chr1 (70-133)||(28968299-28968362)
chr1 (64-214)||(16046787-16046945)
chr1 (146-206)||(28968383-28968443)
[»] scaffold0012 (1 HSPs)
scaffold0012 (70-133)||(55284-55347)
[»] scaffold0356 (1 HSPs)
scaffold0356 (43-206)||(3979-4149)
[»] scaffold0796 (1 HSPs)
scaffold0796 (48-133)||(8-93)


Alignment Details
Target: scaffold0316 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 6742 - 6986
Alignment:
Q  29 acaatgtatagtagtgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagc 128  Q
    ||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6742 acaatgtataacagtgaaatgaaaattgtgagttgtaacttaaaatggtgtaaaaagtgtgagcctcaaacacaatatttatagccaacatgtatgaagc 6841  T
Q  129 aatcacnnnnnnnnttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaattagaaag-nnnnnnntactca 227  Q
    ||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  6842 aatcacaaaaaaaattctacggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaattagaaagaaaaaaaatactca 6941  T
Q  228 tgannnnnnnaggggaaacaaatactcataatgtacatctttatt 272  Q
    |||       |||||||||||||||||||||||||||||||||||    
T  6942 tgatttttttaggggaaacaaatactcataatgtacatctttatt 6986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 7086 - 7141
Alignment:
Q  372 atgaatgtcgaaaataatttgactaatattagttaattgtgaaaacgacatagctc 427  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7086 atgaatgtagaaaataatttgactaatattagttaattgtgaaaacgacatagctc 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 28 - 272
Target Start/End: Complemental strand, 11974212 - 11973968
Alignment:
Q  28 cacaatgtatagtagtgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaag 127  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||   ||||| ||||||| |||||||||||||    
T  11974212 cacaatgtatagcagtgatatgaaaattgtgagttgtaacttaaaatggtgtaaaaagtgtgagcctcaataccaata-ttatagcaaacatgtatgaag 11974114  T
Q  128 caatcacnnnnnnnnttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaattagaaag-nnnnnnntactc 226  Q
    |||||||        |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||        |||||    
T  11974113 caatcacaaaaaaaattctatggatgtagtaattgacaattaaattgtacattaattatcaacaatttgtatgattaaattaaaaagaaaaaaaatactc 11974014  T
Q  227 atgannnnnnnaggggaaacaaatactcataatgtacatctttatt 272  Q
    ||||       ||||||||||||||||||| |||| ||||||||||    
T  11974013 atgatttttttaggggaaacaaatactcatgatgtgcatctttatt 11973968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 11973867 - 11973812
Alignment:
Q  372 atgaatgtcgaaaataatttgactaatattagttaattgtgaaaacgacatagctc 427  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11973867 atgaatgtagaaaataatttgactaatattagttaattgtgaaaacgacatagctc 11973812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 191556 - 191739
Alignment:
Q  31 aatgtatagtagtgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaa 130  Q
    ||||||||| ||||||||||||||| | |||||||||| |||||| |||||||||||||| ||| |||||||||||||||||| |||||||| |||||||    
T  191556 aatgtatagcagtgatatgaaaattatgagttgtaactaaaaatgatgtaaaaagtgtgaacctcaaacacaatatttatagcaaacatgtacgaagcaa 191655  T
Q  131 tcacnnnnnnnnttc--------tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    | ||        |||        |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  191656 ttacgaaaaaaattcccttaatttatggatgtagtaattgataattaaattgtacattaattatcaacaatttgtatgattaaa 191739  T

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Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 181753 - 181838
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| |||| | ||| |||| |||| | || ||||||||||||||||| |||||||||| |||||||||    
T  181753 tgaaatttgtgagttgtaactcaaaacgttgtgaaaattgtgggtctcaaacacaatatttatagtcaacatgtattaagcaatca 181838  T

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Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 191774 - 191808
Alignment:
Q  238 aggggaaacaaatactcataatgtacatctttatt 272  Q
    ||||||||||||||||||| |||||||||||||||    
T  191774 aggggaaacaaatactcatgatgtacatctttatt 191808  T

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Target: scaffold0003; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 188693 - 188778
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| |||| | | | |||| |||| | || ||||||||||| ||||| |||||||||| |||||||||    
T  188693 tgaaatttgtgagttgtaactcaaaacgttttgaaaattgtgggtctcaaacacaatatctatagtcaacatgtattaagcaatca 188778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 11818539 - 11818721
Alignment:
Q  34 gtatagtagtgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    |||||| |||||||| |||||| | |||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||| |||||||| |    
T  11818539 gtatagcagtgatataaaaattatgagttgtaactgaaaatggtgtaaaaagtgtgagtctcaaacacaatatttatagcaaacatgtacgaagcaatta 11818638  T
Q  134 c-nnnnnnnnttc---------tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    |         |||         |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  11818639 cgaaaaaaaattccccttaatttatggatgtagtaattgataattaaattgtacaataattatcaacaatttgtatgattaaa 11818721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 41758458 - 41758299
Alignment:
Q  43 tgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcacnnnnnnnn 142  Q
    |||| |||||||| | |||| ||||| |||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||            
T  41758458 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaatcacaaaaaatt 41758359  T
Q  143 ttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    | |     ||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  41758358 tcc----catgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaa 41758299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 11374545 - 11374630
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| ||||   ||| |||| || ||| || ||||||||||||||||| |||||||||  |||||||||    
T  11374545 tgaaatttgtgagttgtaactcaaaacattgtgaaaattgcgagtctcaaacacaatatttatagtcaacatgtaccaagcaatca 11374630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 33856476 - 33856317
Alignment:
Q  43 tgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcacnnnnnnnn 142  Q
    |||| |||||||| | |||| ||||| |||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||            
T  33856476 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaatcacaaaaaatt 33856377  T
Q  143 ttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    | |     ||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  33856376 tcc----catgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaa 33856317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 14106725 - 14106556
Alignment:
Q  43 tgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcac------nn 136  Q
    |||| |||||||| | |||| ||||| |||||| ||| |||||||||||||| ||| |||||||||||| |||| ||||| |||||||||||            
T  14106725 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaatacaatatttataaccaatatgtacgaagcaatcacaaaaattt 14106626  T
Q  137 nnnnnnttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
           | |||||||||||||||||| ||| || ||| ||||||||||||||||||| |||||||||||    
T  14106625 cccttaatttatggatgtagtaattgaaaataaattggaacattaattatcaacaattagtatgattaaa 14106556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 7781791 - 7781860
Alignment:
Q  146 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 214  Q
    |||||||  ||||||||| ||| |||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  7781791 tatggatagagtaattgaaaataaaatggtacattaattttcaaaaatttatatgattaaaattagaaag 7781860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 7831065 - 7831134
Alignment:
Q  146 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 214  Q
    |||||||  ||||||||| ||| |||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  7831065 tatggatagagtaattgaaaataaaatggtacattaattttcaaaaatttatatgattaaaattagaaag 7831134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 31926593 - 31926752
Alignment:
Q  43 tgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcacnnnnnnnn 142  Q
    |||| |||||||| | |||| ||||| |||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||            
T  31926593 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaatcacaaaaaatt 31926692  T
Q  143 ttctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    | |     ||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  31926693 tcc----catgtagtaattgaaaataaattggtacattaattatcaacaattagtatgattaaa 31926752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 37525431 - 37525368
Alignment:
Q  70 aaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  37525431 aaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccaatatgtatgaagcaatca 37525368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 14289338 - 14289268
Alignment:
Q  64 taacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcac 134  Q
    ||||| ||| |||||| |||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  14289338 taactcaaagtggtgtgaaaactgtgagcctcaaacataatatttatagccaacatgtatgaaggaatcac 14289268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 37525347 - 37525278
Alignment:
Q  146 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 214  Q
    ||||||| |||||||||| ||| |||| ||||||||||| |||| ||||| ||||||| |||||||||||    
T  37525347 tatggatatagtaattgaaaataaaattgtacattaattttcaaaaatttatatgattaaaattagaaag 37525278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 2255950 - 2255887
Alignment:
Q  70 aaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2255950 aaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccaacatgtatgaagcaatca 2255887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 2255866 - 2255797
Alignment:
Q  146 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 214  Q
    ||||||| |||||||||| ||| |||| ||||||||||| |||| ||||| ||||||| |||||||||||    
T  2255866 tatggatatagtaattgaaaataaaattgtacattaattttcaaaaatttatatgattaaaattagaaag 2255797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 3695859 - 3695944
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| |||| | | | |||| |||| | || ||||||||||| ||||| |||||||||| |||||||||    
T  3695859 tgaaatttgtgagttgtaactcaaaacgttttgaaaattgtgggtctcaaacacaatatctatagtcaacatgtattaagcaatca 3695944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 3698221 - 3698306
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| |||| | | | |||| |||| | || ||||||||||| ||||| |||||||||| |||||||||    
T  3698221 tgaaatttgtgagttgtaactcaaaacgttttgaaaattgtgggtctcaaacacaatatctatagtcaacatgtattaagcaatca 3698306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 3870929 - 3870844
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| |||| | | | |||| |||| | || ||||||||||| ||||| |||||||||| |||||||||    
T  3870929 tgaaatttgtgagttgtaactcaaaacgttttgaaaattgtgggtctcaaacacaatatctatagtcaacatgtattaagcaatca 3870844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 28968299 - 28968362
Alignment:
Q  70 aaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28968299 aaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccaacatgtatgaagcaatca 28968362  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 16046787 - 16046945
Alignment:
Q  64 taacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcacnnnnnnnnt-------tctatggatgtag 156  Q
    ||||| |||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||        |       | | |||||||||    
T  16046787 taactcaaaatgatgtgaaaagtgtgagcctcaaacacaatatttataaccaatatgtatgaagcaatcacaaaaaatttcccttaatttttggatgtag 16046886  T
Q  157 taattgacaattaaatggtacattaattatcaacaatttgtatgatt-aaattagaaag 214  Q
    |||||||  || || ||||||||||||||||||||||| |||||||| |||||||||||    
T  16046887 taattgaagataaattggtacattaattatcaacaattagtatgattaaaattagaaag 16046945  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 28968383 - 28968443
Alignment:
Q  146 tatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||| ||||  ||||||||||    
T  28968383 tatggatatagtaattgaaaataaaatggtacattaattttcaaaaattgatatgattaaa 28968443  T

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Target: scaffold0012 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 55347 - 55284
Alignment:
Q  70 aaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  55347 aaaatggtgtgaaaagtgtgagcctcaaacacaatatttatagccatcatgtatgaagcaatca 55284  T

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Target: scaffold0356 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 4149 - 3979
Alignment:
Q  43 tgatatgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatcacnnnnnnnn 142  Q
    |||| |||||||| | |||| ||||| |||||| ||| |||||||||||||| ||| |||||||||||| |||| ||||| |||||||||||            
T  4149 tgatgtgaaaattatgagttataactcaaaatgatgtgaaaagtgtgagcctcaaatacaatatttataaccaatatgtacgaagcaatcacaaaaaatt 4050  T
Q  143 t-------tctatggatgtagtaattgacaattaaatggtacattaattatcaacaatttgtatgattaaa 206  Q
    |       | |||||||||||||||||| ||| || ||| ||||||||||||||||||| |||||||||||    
T  4049 tcccttaatttatggatgtagtaattgaaaataaattggaacattaattatcaacaattagtatgattaaa 3979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 93 - 8
Alignment:
Q  48 tgaaaattgtaagttgtaacttaaaatggtgtaaaaagtgtgagcctgaaacacaatatttatagccaacatgtatgaagcaatca 133  Q
    ||||| |||| |||||||||| |||| | ||| |||| |||| | || ||||||||||||||||| |||||||||| |||||||||    
T  93 tgaaatttgtgagttgtaactcaaaacgttgtgaaaattgtgggtctcaaacacaatatttatagtcaacatgtatcaagcaatca 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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