View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_high_11 (Length: 431)
Name: NF0851_high_11
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1869574 - 1869511
Alignment:
| Q |
1 |
catcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatttgcgg |
64 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1869574 |
catcatttgtaaggtacataatgctctaaaagagtctcatttttcttttaaaaaacatatgcgg |
1869511 |
T |
|
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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 12749709 - 12749657
Alignment:
| Q |
247 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
299 |
Q |
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| T |
12749709 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
12749657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 12812801 - 12812749
Alignment:
| Q |
247 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812801 |
tagcctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
12812749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 12812660 - 12812611
Alignment:
| Q |
250 |
cctcctccagctccacctccttcaccacctccgtagccagaagcaccatg |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
12812660 |
cctcctccagccccacctccttcaccacctccatagccagaatcaccatg |
12812611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 12812732 - 12812689
Alignment:
| Q |
247 |
tagcctcctccagctccacctccttcaccacctccgtagccaga |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12812732 |
tagcctcctccagctccacctcctttgccacctccgtagccaga |
12812689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 12749637 - 12749597
Alignment:
| Q |
250 |
cctcctccagctccacctccttcaccacctccgtagccaga |
290 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12749637 |
cctcctccagctccacctcctttgccacctccgtagccaga |
12749597 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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