View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0851_high_20 (Length: 296)
Name: NF0851_high_20
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 52188467 - 52188215
Alignment:
| Q |
29 |
aatatgatactcaaatatctaagtctgcatgtgcctaaaattaaattttaaaaaatacatgattgaacaatctacttgatacnnnnnnnnnnnnnngaag |
128 |
Q |
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| T |
52188467 |
aatatgatactcaaatatctaagtctgcatgtgcctaaaattaaattttaaaaaatacatgattgaacaatctacttaatacttttttttttttttgaag |
52188368 |
T |
|
| Q |
129 |
gaatctacttaatacttataaacttattacgacnnnnnnnngtaaattagtatcagtgaagcttctatgaagtgaatgactaaaattactggtccaacat |
228 |
Q |
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| T |
52188367 |
gaatctacttaatacttataaacttattacgacttttttttgtaaattagtatcagtgaagctcctatgaagtgaatgactaaaattactggtccaacat |
52188268 |
T |
|
| Q |
229 |
gtgatttaagatgtacaatcaagnnnnnnncacaagtagcaactcaagttcat |
281 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52188267 |
gtgatttaagatgtacaatcaagtttttttcacaagtagcaactcaagttcat |
52188215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 38990538 - 38990475
Alignment:
| Q |
218 |
tggtccaacatgtgatttaagatgtacaatcaagnnnnnnncacaagtagcaactcaagttcat |
281 |
Q |
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||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
38990538 |
tggtccaacatatgattcaagatgtacaatcaagtttttttcacaactagcaactcaagttcat |
38990475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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