View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0851_low_11 (Length: 437)

Name: NF0851_low_11
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0851_low_11
NF0851_low_11
[»] chr1 (5 HSPs)
chr1 (181-355)||(31070938-31071110)
chr1 (181-283)||(229445-229547)
chr1 (181-258)||(50525699-50525776)
chr1 (284-355)||(229077-229148)
chr1 (304-355)||(50525786-50525837)
[»] chr2 (1 HSPs)
chr2 (181-317)||(5590640-5590774)
[»] chr3 (4 HSPs)
chr3 (241-348)||(27405084-27405189)
chr3 (84-160)||(24672909-24672982)
chr3 (85-160)||(24656537-24656609)
chr3 (59-174)||(24677035-24677147)
[»] chr5 (1 HSPs)
chr5 (181-283)||(38919564-38919666)
[»] chr7 (1 HSPs)
chr7 (209-296)||(38130442-38130527)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 181 - 355
Target Start/End: Original strand, 31070938 - 31071110
Alignment:
Q  181 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 280  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  31070938 agagttgctatacggtacgacaagttaacatacgaatttgcacggcactttcaactaaaggtggtattctcttttaatgggtactaccttacaatattt- 31071036  T
Q  281 atataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct 355  Q
     |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  31071037 -tataataaaacataaacttggcgattatataaacgtttagagaagcaaaacagtgatatacattcttctttgct 31071110  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 229547 - 229445
Alignment:
Q  181 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 280  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229547 agagttgttatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 229448  T
Q  281 ata 283  Q
    |||    
T  229447 ata 229445  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 50525699 - 50525776
Alignment:
Q  181 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat 258  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50525699 agagttgctatacggtacgacaagttaaaacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat 50525776  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 229148 - 229077
Alignment:
Q  284 taataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  229148 taataaaacataaacttggctattatataaacgtctagagaagcaaaacagttatatacattcttctttgct 229077  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 50525786 - 50525837
Alignment:
Q  304 tattatataaacgtctagagaagcaaaacagtgatatacattcttctctgct 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50525786 tattatataaacgtctagagaagcaaaacagtgatatacattcttctttgct 50525837  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 5590774 - 5590640
Alignment:
Q  181 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 280  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||   |||| |  | ||||||||||||||||||| || ||||||||||||||||     
T  5590774 agagttgctatacggtacgacaaatcaacacacgaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgctaccttacaatattt- 5590676  T
Q  281 atataataaaacataaacttggctattatataaacgt 317  Q
     ||||||||||||| | | ||| || |||||||||||    
T  5590675 -tataataaaacatcatcctggttaatatataaacgt 5590640  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 27405084 - 27405189
Alignment:
Q  241 gtggtattctcttttaatgggtactaccttacaatattttatataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatat 340  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||| ||| || ||||||||||| ||||||||  |||| ||||||     
T  27405084 gtggtattctcttttaatgggtgctaccttacaatattt--tataataaaacatcaacatggttaatatataaacgtttagagaaggcaaacggtgataa 27405181  T
Q  341 acattctt 348  Q
    ||||||||    
T  27405182 acattctt 27405189  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 24672909 - 24672982
Alignment:
Q  84 gattgttggaaggggttgttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataagaat 160  Q
    ||||||||||||||||||   |||||  ||||||||||||| ||||| | |||||| ||||||||| ||||||||||    
T  24672909 gattgttggaaggggttg---gtgtttaaaccttgatacttaattccaattgaagctaactctaaggtcataagaat 24672982  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 24656537 - 24656609
Alignment:
Q  85 attgttggaaggggttgttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataagaat 160  Q
    |||||||||||||||||   |||||  ||||||| ||||||| ||| | |||| ||||||||||| ||||||||||    
T  24656537 attgttggaaggggttg---gtgtttaaaccttggtactttactccaattgaacccaactctaaggtcataagaat 24656609  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 24677035 - 24677147
Alignment:
Q  59 caaaaacatgaaaaatgttggggaggattgttggaaggggttgttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataaga 158  Q
    |||||||||||||||  ||||||| | ||||||||| ||||||   ||||| ||||||||| |||| || || |  ||||||||||| ||||| || |||    
T  24677035 caaaaacatgaaaaaaattggggaaggttgttggaatgggttg---gtgtttgaaccttgacacttaataccaatggaagccaactccaagctgatcaga 24677131  T
Q  159 atgaaataagctttat 174  Q
    ||   |||||||||||    
T  24677132 atagtataagctttat 24677147  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 38919564 - 38919666
Alignment:
Q  181 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 280  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||   |||| |  | ||||||||||||||||||| ||  ||||||||||||||||    
T  38919564 agagttgctatacgatacgacaagtcaacacacaaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgttaccttacaatatttt 38919663  T
Q  281 ata 283  Q
    |||    
T  38919664 ata 38919666  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 38130527 - 38130442
Alignment:
Q  209 cacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatattttatataataaaacataa 296  Q
    ||||||||||||||||| ||  ||||||| |  |||  |||||||||||||| | |||| ||| |||||||  |||||||||||||||    
T  38130527 cacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattataatattt--tataataaaacataa 38130442  T

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