View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851_low_19 (Length: 376)
Name: NF0851_low_19
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26887365 - 26887144
Alignment:
| Q |
1 |
tataaacttagctacagtttgctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887365 |
tataaacttagctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatga |
26887266 |
T |
|
| Q |
101 |
aaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887265 |
aaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttc |
26887166 |
T |
|
| Q |
201 |
ttgagctgcaagttaagataaa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26887165 |
ttgagctgcaagttaagataaa |
26887144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 51855059 - 51855280
Alignment:
| Q |
1 |
tataaacttagctacagtttgctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855059 |
tataaacttagctacattttgctctttgatccttccaccattagaatcaagtctttcttcatgactcctaaatagagcatcagtatagtgtgcaagatga |
51855158 |
T |
|
| Q |
101 |
aaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51855159 |
aaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttatccaaaattgttc |
51855258 |
T |
|
| Q |
201 |
ttgagctgcaagttaagataaa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
51855259 |
ttgagctgcaagttaagataaa |
51855280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 35043384 - 35043201
Alignment:
| Q |
39 |
cattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatgaaaatgggtatgacatttcttttccatggccttcttatc |
138 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35043384 |
cattagaattaagtctttcttcatggctcctaaatagagcatcagtatagtgtgcaagatgaaaatgagtttgacatttcttttccatggccttcttatc |
35043285 |
T |
|
| Q |
139 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttcttgagctgcaagttaagataaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35043284 |
tgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttctccaaaattgttcttgagctgcaagttaagataaa |
35043201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8944294 - 8944515
Alignment:
| Q |
1 |
tataaacttagctacagtttgctctttgatccttccaccattagaatcaagtttttcttcatgactcctaaatagagcatcagtatagtgtgcaagatga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944294 |
tataaacttagctacattttgctctttgatccttccaccattagaatcaagtatttcttcatgactcctaaatagagcatcagtatagtgtgcaagatga |
8944393 |
T |
|
| Q |
101 |
aaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaattgttc |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
8944394 |
aaatgggtattacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagaaactgtaggtttcaaatacttctccaaaattgttc |
8944493 |
T |
|
| Q |
201 |
ttgagctgcaagttaagataaa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8944494 |
ttgagctgcaagttaagataaa |
8944515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21989035 - 21989075
Alignment:
| Q |
1 |
tataaacttagctacagtttgctctttgatccttccaccat |
41 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
21989035 |
tataaacttagctacatttgactctttgatccttccaccat |
21989075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2756 times since January 2019
Visitors: 6167