View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0851_low_8 (Length: 489)
Name: NF0851_low_8
Description: NF0851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0851_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 28 - 484
Target Start/End: Complemental strand, 47254884 - 47254424
Alignment:
| Q |
28 |
cattaaagaagtacacacatcacaaaagacaaggagattacgttatattaaaccataattaacaaataagcttaattaggattccctttctcttgcttag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47254884 |
cattaaagaagtacacacatcacaaaagacaaggagattacgttatattaaaccataattaacaaataagcttaattaggattccctttctcttgcttag |
47254785 |
T |
|
| Q |
128 |
tcaaaggacaggaataagattgttaatatgactccccctgcatgcagggatttaacatggagaagtcctaagcatgtggccacatgatcataatttctaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47254784 |
tcaaaggacaggaataagattgttaatatgactccccctgcatgcagggatttaacatggagaagtcctaagcatgtggccacatgaccataatttctaa |
47254685 |
T |
|
| Q |
228 |
ccatgtgacaactgaggttaaagattggagatatttatgaaatgaccaaaacatcctctatagaagttggtcacattgttctaaacaaagaaaaaccagt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47254684 |
ccatgtgacaactgaggttaaagattggagatatttatgaaatgaccaaaacatcctctatagaagttggtcacattgttctaaacaaagaaaaaccagt |
47254585 |
T |
|
| Q |
328 |
tgtgtgtatcatgttcatctctt----aaactttcgttaagatttgttcaggttcttaattaattcctgacagctaataaacattggagtaaatctttca |
423 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47254584 |
tgtgtgtatcatgttcatctcttagaaaaactttcgttaagatttgttcaggttcttaattagttcctgacagctaataaacattggagtaaatctttca |
47254485 |
T |
|
| Q |
424 |
attattacttattggctacttttgttaataagtacattatccttgaactatctgtgctcct |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
47254484 |
attattacttattggctacttttgttaataagtacattatccttgaactatgtgtggtcct |
47254424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 319 times since January 2019
Visitors: 6128