View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_high_12 (Length: 416)

Name: NF0852_high_12
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_high_12
NF0852_high_12
[»] chr4 (7 HSPs)
chr4 (235-408)||(32649321-32649494)
chr4 (124-235)||(32649169-32649281)
chr4 (77-146)||(32649095-32649164)
chr4 (35-79)||(32225581-32225625)
chr4 (37-76)||(23976706-23976745)
chr4 (36-74)||(44376078-44376116)
chr4 (36-77)||(17558824-17558865)
[»] chr2 (1 HSPs)
chr2 (37-206)||(22136279-22136449)
[»] chr5 (7 HSPs)
chr5 (35-91)||(16349713-16349769)
chr5 (37-91)||(4082574-4082628)
chr5 (36-74)||(30096275-30096313)
chr5 (37-95)||(16222687-16222745)
chr5 (37-79)||(40951482-40951524)
chr5 (37-74)||(25099236-25099273)
chr5 (37-74)||(25158326-25158363)
[»] chr8 (5 HSPs)
chr8 (35-89)||(16367864-16367918)
chr8 (37-89)||(42308123-42308175)
chr8 (36-74)||(405353-405391)
chr8 (35-81)||(771642-771688)
chr8 (37-65)||(17695634-17695662)
[»] chr1 (5 HSPs)
chr1 (34-74)||(28947451-28947491)
chr1 (31-89)||(27840301-27840359)
chr1 (37-79)||(51387129-51387171)
chr1 (32-89)||(47250304-47250361)
chr1 (37-81)||(50293655-50293699)
[»] chr7 (1 HSPs)
chr7 (35-74)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (37-74)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (37-74)||(8657064-8657101)
chr6 (37-74)||(33289070-33289107)
[»] chr3 (2 HSPs)
chr3 (37-82)||(53693213-53693258)
chr3 (37-81)||(44708227-44708271)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 235 - 408
Target Start/End: Original strand, 32649321 - 32649494
Alignment:
Q  235 aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacaatgatattaaccatcaggaattgcataagga 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  32649321 aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacatagatattaaccatcaggaattgcataagga 32649420  T
Q  335 taacgattggcaggctatcaaactaattagttataatagaaagttctactccttgttctttattgcttcatctc 408  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32649421 taacaattggcaggctatcaaactaattagttatagtagaaagttctactccttgttctttattgcttcatctc 32649494  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 32649169 - 32649281
Alignment:
Q  124 cagagaatatgtctgttgttacagacttatgtgtggtctcgtgatatacg-atgtaacgtagtgtgttttgttgtttcactaaacttatgtgacagtata 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  32649169 cagagaatatgtctgttgttacaaacttatgtgtggtctcgtgatatacgaatgtagcgttgtgtgttttgttgtgtcactaaacttatgtgacagtata 32649268  T
Q  223 tttagtcattaga 235  Q
     ||||||||||||    
T  32649269 cttagtcattaga 32649281  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 32649095 - 32649164
Alignment:
Q  77 gtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtctgttgttaca 146  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  32649095 gtttaagacattacttgaaatatattgtagtatgaatgaacttttcgcagaaaatatgtctgttgttaca 32649164  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 32225581 - 32225625
Alignment:
Q  35 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtt 79  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  32225581 aaactagatcgtccaccggtgctgccgcacgggtcatatatagtt 32225625  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 23976706 - 23976745
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatata 76  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  23976706 actagatcgtccacccgtgctgccgcacgggtcatatata 23976745  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 44376078 - 44376116
Alignment:
Q  36 aactagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  44376078 aactagatcgtccacccgtgctgccgcacgggtcatata 44376116  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 17558824 - 17558865
Alignment:
Q  36 aactagatcgtccacccgtgctgccgcacgtatcatatatag 77  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatag 17558865  T

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Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 22136279 - 22136449
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtc 136  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||| ||||||||   ||||| || |||||||||||||    
T  22136279 actagatcgtccacccgtgttgccgcacgggtcatatatagtttaagacattactcgaaatatattgtagtatga---aacttgtcgcagagaatatgtc 22136375  T
Q  137 tgttgttacagacttatgtgtggtctcgtgatatac----gatgtaacgtagtgtgttttgttgtttcactaaa 206  Q
    |||||||||| |||||||||||||||||||||||||     |||||||||||||||||||| |||| |||||||    
T  22136376 tgttgttacaaacttatgtgtggtctcgtgatatactacaaatgtaacgtagtgtgttttgctgttccactaaa 22136449  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 16349713 - 16349769
Alignment:
Q  35 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 91  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  16349713 aaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 16349769  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 4082628 - 4082574
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 91  Q
    |||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 4082574  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 30096275 - 30096313
Alignment:
Q  36 aactagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  30096275 aactagatcgtccacccgtgctgccgcacggatcatata 30096313  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 16222745 - 16222687
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaa 95  Q
    ||||||||||| |||||||||||||||| | |||||||||| | || |||||| |||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaa 16222687  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 40951524 - 40951482
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 79  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 40951482  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 25099236 - 25099273
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25099236 actagatcgtccacccgtgctgccgcacgggtcatata 25099273  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 25158326 - 25158363
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25158326 actagatcgtccacccgtgctgccgcacgggtcatata 25158363  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 16367918 - 16367864
Alignment:
Q  35 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 89  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 89  Q
    ||||||||||||||| |||||||||||||  |||||||||||| || ||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta 42308175  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 405353 - 405391
Alignment:
Q  36 aactagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  405353 aactagatcgtccacccgtgctgccgcacgggtcatata 405391  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 771688 - 771642
Alignment:
Q  35 aaactagatcgtccacccgtgctgccgcacgtatcatatatagttta 81  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  771688 aaactaggtcgtctacccgtgctgccgcacgggtcatatatagttta 771642  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 17695662 - 17695634
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacg 65  Q
    |||||||||||||||||||||||||||||    
T  17695662 actagatcgtccacccgtgctgccgcacg 17695634  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 28947451 - 28947491
Alignment:
Q  34 taaactagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  28947451 taaactagatcgtccacccgtgctgccgcacgggtcatata 28947491  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 27840301 - 27840359
Alignment:
Q  31 aaataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 89  Q
    |||| |||||||||||| |||||||||| ||||||  |||| |||||||||| ||||||    
T  27840301 aaatgaactagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacatta 27840359  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 51387129 - 51387171
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 79  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 51387171  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 47250361 - 47250304
Alignment:
Q  32 aataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 89  Q
    |||| ||||||||||||| ||| |||||||||||  |||||||||||| || ||||||    
T  47250361 aatatactagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacatta 47250304  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 50293699 - 50293655
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagttta 81  Q
    ||||||||||| |||| ||||||||||||  ||||||||||||||    
T  50293699 actagatcgtctacccatgctgccgcacgggtcatatatagttta 50293655  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 31097943 - 31097904
Alignment:
Q  35 aaactagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31097943 aaactagatcgtccacccgtgctgccgcacgggtcatata 31097904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 1146 - 1109
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||  |||||||    
T  1146 actagatcgtccacccgtgctgccgcacgggtcatata 1109  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 8657064 - 8657101
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||  |||||||    
T  8657064 actagatcgtccacccgtgctgccgcacgggtcatata 8657101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 33289070 - 33289107
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatata 74  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33289070 actagatcgtccacccgtgctgccgcacgggtcatata 33289107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 53693258 - 53693213
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaa 82  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||    
T  53693258 actagatcgtctacccgtgctgccgcacaggtcatatatagtttaa 53693213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 44708227 - 44708271
Alignment:
Q  37 actagatcgtccacccgtgctgccgcacgtatcatatatagttta 81  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||    
T  44708227 actagatcgtctacccgtgctgccgcacgggtcatatataattta 44708271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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