View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0852_high_14 (Length: 410)

Name: NF0852_high_14
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0852_high_14
NF0852_high_14
[»] chr1 (17 HSPs)
chr1 (100-396)||(29292457-29292753)
chr1 (109-396)||(29263307-29263595)
chr1 (127-234)||(46135687-46135794)
chr1 (100-200)||(35238890-35238990)
chr1 (100-235)||(3448946-3449081)
chr1 (100-234)||(12180799-12180934)
chr1 (101-235)||(11670937-11671071)
chr1 (151-235)||(3447241-3447325)
chr1 (100-234)||(21087687-21087818)
chr1 (101-208)||(11672545-11672652)
chr1 (100-235)||(13993658-13993793)
chr1 (102-196)||(36814105-36814199)
chr1 (127-232)||(20771093-20771195)
chr1 (100-196)||(36817250-36817346)
chr1 (100-175)||(4033080-4033155)
chr1 (100-201)||(10162855-10162955)
chr1 (142-187)||(12181411-12181456)
[»] chr5 (6 HSPs)
chr5 (100-234)||(6454347-6454481)
chr5 (100-235)||(13860087-13860226)
chr5 (101-235)||(11664650-11664790)
chr5 (100-235)||(13858179-13858318)
chr5 (200-235)||(5157436-5157471)
chr5 (153-221)||(2980743-2980811)
[»] chr8 (6 HSPs)
chr8 (100-234)||(7305480-7305614)
chr8 (100-222)||(7302947-7303069)
chr8 (100-219)||(13014706-13014825)
chr8 (100-207)||(13013446-13013553)
chr8 (100-187)||(39544793-39544880)
chr8 (100-186)||(38064340-38064426)
[»] chr4 (7 HSPs)
chr4 (100-217)||(36761825-36761942)
chr4 (100-232)||(40603935-40604067)
chr4 (100-235)||(22497847-22497982)
chr4 (100-219)||(49058287-49058406)
chr4 (101-235)||(42430808-42430942)
chr4 (100-222)||(3071609-3071731)
chr4 (154-218)||(38705645-38705709)
[»] chr3 (2 HSPs)
chr3 (100-235)||(49089560-49089695)
chr3 (100-235)||(3964694-3964829)
[»] chr6 (1 HSPs)
chr6 (100-234)||(1520383-1520517)
[»] chr7 (7 HSPs)
chr7 (100-235)||(48572671-48572806)
chr7 (100-227)||(41397661-41397792)
chr7 (100-222)||(30879421-30879542)
chr7 (100-234)||(22112196-22112330)
chr7 (100-234)||(40494121-40494255)
chr7 (100-227)||(22130467-22130597)
chr7 (100-227)||(40500509-40500639)
[»] chr2 (3 HSPs)
chr2 (100-199)||(14389768-14389867)
chr2 (127-211)||(35549710-35549794)
chr2 (103-227)||(5813399-5813523)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 396
Target Start/End: Complemental strand, 29292753 - 29292457
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
29292753 ttaatatatttagaacaaccgacgtctaattcgattgatagaaatcagaaggtaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 29292654  T
200 atcaaacttacaacatgaactataactcttcatttattcatcttttcgttagttactataaacgcagtggcgtggcgatacacaacaaatacataattgc 299  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
29292653 atcgaacttacaacatgaactataactcttcatttattcatcttttcgttagttactataaacacagtggcgtggcgatacacaacaaatacataattgc 29292554  T
300 attcatcttttcgctagttactataaagatagtggcgtggcgatagacaacaaatacataactgcttagtccattgttcattgcagccttcgttata 396  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
29292553 attcatcttttcgctagttactataaaggcagtggcgtggcgatagacaacaattacataactgcttagtccattgttcattgcagccttcgttata 29292457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 29263595 - 29263307
Alignment:
109 ttagtacaactgacgtctaattcgattgatagaaatcagaaag-caaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaact 207  Q
    |||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
29263595 ttagaacaaccgacgtctaattcgattgatagaaatcagaagggcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcgaact 29263496  T
208 tacaacatgaactataactcttcatttattcatcttttcgttagttactataaacgcagtggcgtggcgatacacaacaaatacataattgcattcatct 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
29263495 tacaacatgaactataattcttcatttattcatcttttcgttagttactataaactcagtggcgtggcgatacacaacaaatacataattgcattcatct 29263396  T
308 tttcgctagttactataaagatagtggcgtggcgatagacaacaaatacataactgcttagtccattgttcattgcagccttcgttata 396  Q
    |||||||||||||||||||   |||||| |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
29263395 tttcgctagttactataaacgcagtggcatggcgatagacaacgaacacataattgcttagtccattgttcattgcagccttcgttata 29263307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 46135687 - 46135794
Alignment:
127 aattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaactataact 226  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||    
46135687 aattcgattgataagaattcgaaagcaaaaagaatttaaggttcaaataaccaataaaatacctagtattgaaatcgaacttacaacatgaactatgact 46135786  T
227 cttcattt 234  Q
    ||||||||    
46135787 cttcattt 46135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 35238890 - 35238990
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| |||||| |||||||||||||| ||||||||  |||||| ||||||||||||||||||  ||||||||||||| |||||||    
35238890 ttaatatatttagaacaaccgacgtcaaattcgattgataggaatcagaagacaaaaaaaatttaaggttcaaataattaataaaatacctagcattgaa 35238989  T
200 a 200  Q
    |    
35238990 a 35238990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 3448946 - 3449081
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||  |  ||||  |||||||| |||| ||| ||||||| ||||||||||||||||||| |||||||||  || ||||||     
3448946 ttaatatatttagaacaaccgatattgaattacattgataggaatctgaaggcaaaaataatttaaggttcaaataactaataaaatagttagcattgag 3449045  T
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    ||| ||||| ||||||||||||| ||||||||||||    
3449046 atcgaacttgcaacatgaactatgactcttcattta 3449081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 12180799 - 12180934
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaa-agaatttaaggttcaaataaccaataaaatacctaacattga 198  Q
    ||||||||||||| ||||| ||| || |||| ||||||||| ||||  || |||||| |||||||||||||||||||| |||||||||  ||||||||||    
12180799 ttaatatatttagaacaaccgacatcgaattagattgataggaatccaaaggcaaaaaagaatttaaggttcaaataaacaataaaatggctaacattga 12180898  T
199 aatcaaacttacaacatgaactataactcttcattt 234  Q
    |||  ||||| ||| ||||||||| |||| ||||||    
12180899 aattgaacttgcaaaatgaactatgactcctcattt 12180934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 11670937 - 11671071
Alignment:
101 taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaa 200  Q
    |||||||||||| ||||| |||  | ||||  ||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||  || ||||||||    
11670937 taatatatttagaacaaccgacaacaaattacattgataaaaatctgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttagcattgaaa 11671036  T
201 tcaaacttacaacatgaactataactcttcattta 235  Q
    || ||||| | |||||||| || |||| |||||||    
11671037 tcgaacttgctacatgaaccatgactcctcattta 11671071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 3447241 - 3447325
Alignment:
151 gcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||| |||||||||| |||||||||||||||||| ||| |||||||||| ||||| ||||||||||||  ||||||||||||    
3447241 gcaaaaataatttaaggtacaaataaccaataaaatagctatcattgaaatcgaacttgcaacatgaactaagactcttcattta 3447325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 21087818 - 21087687
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||  || |||| ||||||||| ||||  || ||||||||||||||||  | ||||||||||||||||| ||| |||||||    
21087818 ttaatatatttagaacaaccgaaatcgaattagattgataggaatctaaaggcaaaaagaatttaagtattaaataaccaataaaatagctagcattgaa 21087719  T
200 atcaaacttacaacatgaactataactcttcattt 234  Q
    ||| |||   ||||||||||||| |||||||||||    
21087718 atcgaac---caacatgaactatgactcttcattt 21087687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 11672545 - 11672652
Alignment:
101 taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaa 200  Q
    ||||||||| || ||||| ||| || |||| ||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||||  || ||||||||    
11672545 taatatattcagaacaaccgacatcgaattagattgatcgaaatctgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttagcattgaaa 11672644  T
201 tcaaactt 208  Q
    | ||||||    
11672645 tgaaactt 11672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 13993658 - 13993793
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    |||||||||||   ||||| ||| || |||| |||| ||||||||  ||| |||||||||||||||| | |||||||||||||||||  ||| |||  ||    
13993658 ttaatatatttctaacaaccgacatcaaattagatttatagaaatttgaaggcaaaaagaatttaagatccaaataaccaataaaatggctagcatataa 13993757  T
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||||| || |||||||  |||||||| |||||    
13993758 atcaaacttccatcatgaaccgtaactctttattta 13993793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 36814199 - 36814105
Alignment:
102 aatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacatt 196  Q
    ||||||||||| ||||| ||| |  |||| |||| |||| |||| ||| ||||||||||||||| ||||||||||||||||||||| ||| ||||    
36814199 aatatatttagaacaaccgacattgaattagattaataggaatctgaaggcaaaaagaatttaaagttcaaataaccaataaaatagctagcatt 36814105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 20771195 - 20771093
Alignment:
127 aattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaactataact 226  Q
    |||| ||||||||| ||||  || ||||||||||||||||  | ||||||||||||| ||| ||| |||||||||| |||   ||||||||||||| |||    
20771195 aattagattgataggaatctaaaggcaaaaagaatttaagtattaaataaccaataagatagctagcattgaaatcgaac---caacatgaactatgact 20771099  T
227 cttcat 232  Q
    ||||||    
20771098 cttcat 20771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 36817346 - 36817250
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacatt 196  Q
    ||||||||||||| ||||| ||| |  |||| |||| |||| |||  ||| |||||||||| |||| ||||||||||||||||||||| ||| ||||    
36817346 ttaatatatttagaacaaccgacattgaattagattaataggaatttgaatgcaaaaagaaattaatgttcaaataaccaataaaatagctagcatt 36817250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 4033080 - 4033155
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaata 175  Q
    ||||||||||||| | ||| ||| || ||||  |||||||  |||| ||| |||||||||||||||||||||||||    
4033080 ttaatatatttagaataaccgacatcgaattaaattgatatgaatctgaaggcaaaaagaatttaaggttcaaata 4033155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 10162955 - 10162855
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||  |||||  || || |||| |||||||||||||  ||| | |||||||| |||||| | ||||||||||| ||||| ||| |||||||    
10162955 ttaatatatttaaaacaaccaacatcaaattagattgatagaaatatgaaggtaaaaagaagttaaggatgaaataaccaat-aaatagctagcattgaa 10162857  T
200 at 201  Q
    ||    
10162856 at 10162855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 12181411 - 12181456
Alignment:
142 aatcagaaagcaaaaagaatttaaggttcaaataaccaataaaata 187  Q
    |||| ||| |||| ||||||||||||||||||||| ||||||||||    
12181411 aatctgaaggcaacaagaatttaaggttcaaataatcaataaaata 12181456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 6454347 - 6454481
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| || |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||    
6454347 ttaatatatttagaacaaccgacctcgaattcgattgataggaatctgaaggcaaaaagaatttaaggttcaaataaccaataaaattcctagcattgaa 6454446  T
200 atcaaacttacaacatgaactataactcttcattt 234  Q
    ||| ||||||||| ||||||||| |||||||||||    
6454447 atcgaacttacaatatgaactatgactcttcattt 6454481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 13860226 - 13860087
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaa----ggttcaaataaccaataaaatacctaacat 195  Q
    ||||||||||||| ||||| ||| || |||| ||||||||| |||| ||| |||||||||||||||    |||||||||||| ||||||||| ||||||     
13860226 ttaatatatttagaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcaaataactaataaaatagctaacac 13860127  T
196 tgaaatcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||| |||||  |||||||| ||| |||| |||||||    
13860126 tgaaatcgaacttgaaacatgaattatgactcctcattta 13860087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 11664650 - 11664790
Alignment:
101 taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattg--- 197  Q
    |||||||||||  ||||| ||| || |||| |||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||  || |||||       
11664650 taatatatttaaaacaaccgacatcgaattagattgatagaaatctgaaggcaaaaggaattcaaggttcaaataaccaataaaatagttagcattgaac 11664749  T
198 ---aaatcaaacttacaacatgaactataactcttcattta 235  Q
       ||||||||||| | ||||||||||| ||||||||||||    
11664750 tcaaaatcaaacttgctacatgaactatgactcttcattta 11664790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 13858179 - 13858318
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaag----gttcaaataaccaataaaatacctaacat 195  Q
    ||||||||||||  ||||| ||| || |||| ||||||||| |||| ||| ||||||||||||||||    ||||||||||| | ||||||| ||| |||    
13858179 ttaatatatttaaaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcaaataactagtaaaatagctagcat 13858278  T
196 tgaaatcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||| ||||| ||||||||| ||| |||| |||||||    
13858279 tgaaatcgaacttgcaacatgaattatgactcatcattta 13858318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 5157471 - 5157436
Alignment:
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    |||||||||||||||||||||| |||||||||||||    
5157471 atcaaacttacaacatgaactacaactcttcattta 5157436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 2980743 - 2980811
Alignment:
153 aaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaacta 221  Q
    ||||| |||||||||| | ||| ||||||| ||||  ||||||||| ||||||||||||| || |||||    
2980743 aaaaataatttaaggtgcgaattaccaatacaatatttaacattgagatcaaacttacaatatcaacta 2980811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 7305480 - 7305614
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||  ||||| ||  || |||||||||||||| |||| |||  ||||| |||||||||||||||||||||||||||||| ||| |||||||    
7305480 ttaatatatttataacaaccgatatcgaattcgattgataggaatctgaagacaaaaggaatttaaggttcaaataaccaataaaatatctagcattgaa 7305579  T
200 atcaaacttacaacatgaactataactcttcattt 234  Q
    ||||||||||||||||||||||| |||||||||||    
7305580 atcaaacttacaacatgaactatgactcttcattt 7305614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 7302947 - 7303069
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||  ||| || |||||||||||||| |||| |||   ||||||||||||| ||| |||||| |||||||||||  |||||||||    
7302947 ttaatatatttagaacaatcgacatcgaattcgattgataggaatctgaagataaaaagaatttaaagtttaaataatcaataaaatactcaacattgaa 7303046  T
200 atcaaacttacaacatgaactat 222  Q
    |||||||||||||||||||||||    
7303047 atcaaacttacaacatgaactat 7303069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 13014706 - 13014825
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| |||||  |  || |||| ||||| ||  |||| |||||||||||||||| ||||||||||||| || ||||||| ||| |||||||    
13014706 ttaatatatttagaacaaccaaaatcgaattagattgttaagaatctgaaagcaaaaagaattcaaggttcaaataatcattaaaatagctagcattgaa 13014805  T
200 atcaaacttacaacatgaac 219  Q
    ||||||||| ||||||||||    
13014806 atcaaacttgcaacatgaac 13014825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 13013446 - 13013553
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| || ||||  |||||||| |||| |||   ||||||||||||||||||||||||| ||||||||  ||| |||||||    
13013446 ttaatatatttagaacaaccgacatcaaattaaattgataggaatctgaagataaaaagaatttaaggttcaaataacgaataaaattactagcattgaa 13013545  T
200 atcaaact 207  Q
    ||||||||    
13013546 atcaaact 13013553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 39544880 - 39544793
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaata 187  Q
    ||||||||||||| ||||| ||| || |||| ||||||||  |||| ||| | |||||||||||||||||||||||||||||||||||    
39544880 ttaatatatttagaacaaccgacatcaaattagattgataagaatctgaaggtaaaaagaatttaaggttcaaataaccaataaaata 39544793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 38064340 - 38064426
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaat 186  Q
    ||||||||||||  ||||| ||| || |||| |||| |||| |||  |||||||||||||| |||||||| ||||||||||||||||    
38064340 ttaatatatttaaaacaaccgacatcgaattagattaataggaatatgaaagcaaaaagaagttaaggttaaaataaccaataaaat 38064426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 36761942 - 36761825
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    |||||||| |||| ||||| ||  || |||||||||||||| |||| ||| |||||||||||||||  |||||||||||||||||||| ||| |||||||    
36761942 ttaatataattagaacaaccgatatcgaattcgattgataggaatctgaacgcaaaaagaatttaaatttcaaataaccaataaaatagctagcattgaa 36761843  T
200 atcaaacttacaacatga 217  Q
    ||||||||||||||||||    
36761842 atcaaacttacaacatga 36761825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 40604067 - 40603935
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| || || ||||||||||| |||  |||   ||||||||||||||||| ||||||||||||||||||||||||| |||    
40604067 ttaatatatttagaacaaccgacatcgaaatcgattgatagtaatttgaagataaaaagaatttaaggtttaaataaccaataaaatacctaacatcgaa 40603968  T
200 atcaaacttacaacatgaactataactcttcat 232  Q
    ||  |||||||||||| |||||| | |||||||    
40603967 atggaacttacaacataaactatgattcttcat 40603935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 22497847 - 22497982
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||||||| || || | |||||||||||||  ||| |||||||||||| ||||||||||||||||||||||||  ||  ||  ||    
22497847 ttaatatatttagaacaactgacatcgaactagattgatagaaatttgaaggcaaaaagaattcaaggttcaaataaccaataaaatagttattatgtaa 22497946  T
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||||| | ||||||||||| |||| |||||||    
22497947 atcaaacttgctacatgaactatgactcctcattta 22497982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 49058406 - 49058287
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||||||| || |||| |||||| | | ||| ||| ||||||||||||||| ||| ||||||||||||||||| |||||||| ||    
49058406 ttaatatatttagaacaactgacatcgaattagattgacaaatatctgaaggcaaaaagaatttaatgttaaaataaccaataaaatagctaacattaaa 49058307  T
200 atcaaacttacaacatgaac 219  Q
    ||| ||||| ||||||||||    
49058306 atcgaacttgcaacatgaac 49058287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 42430942 - 42430808
Alignment:
101 taatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaa 200  Q
    |||||||||||| ||||| ||  || |||| |||||||||||||| ||| ||| |||||||| ||||||||||||| ||||||||||  || ||||||||    
42430942 taatatatttagaacaaccgaaatcgaattagattgatagaaatctgaaggcacaaagaattcaaggttcaaataatcaataaaataattagcattgaaa 42430843  T
201 tcaaacttacaacatgaactataactcttcattta 235  Q
    || || || | ||||||||||| | || |||||||    
42430842 tcgaatttgctacatgaactatgattcctcattta 42430808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 3071609 - 3071731
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    |||||||||||||  |||  ||| || |||| ||||||||| ||||  || |||||||||||| || ||||||||||||||||||||| ||| |||||||    
3071609 ttaatatatttagagcaatcgacatcaaattagattgataggaatctaaaggcaaaaagaattaaaagttcaaataaccaataaaatagctagcattgaa 3071708  T
200 atcaaacttacaacatgaactat 222  Q
    ||  |||||  ||||||||||||    
3071709 attgaacttgtaacatgaactat 3071731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 38705709 - 38705645
Alignment:
154 aaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttacaacatgaa 218  Q
    ||||||||||||| ||||||||||||||||||||  || |||||||||  || || |||||||||    
38705709 aaaagaatttaagattcaaataaccaataaaatagttagcattgaaattgaatttgcaacatgaa 38705645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 49089695 - 49089560
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| |  |||| ||||||||| ||||  || ||||||||||||||||  ||||||||||||||||||| ||| |||||||    
49089695 ttaatatatttagaacaaccgacattgaattagattgataggaatcttaaggcaaaaagaatttaagagtcaaataaccaataaaatagctagcattgaa 49089596  T
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||||| |||||| ||||| ||||| |||||||    
49089595 atcaaacttgcaacataaactacaactcctcattta 49089560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 3964829 - 3964694
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    |||||||||||   ||||| ||| || | || |||| ||||||||  ||| |||||||||||||||| | |||||||||||||||||  ||| |||  ||    
3964829 ttaatatatttccaacaaccgacatcaagttagattaatagaaatttgaaggcaaaaagaatttaagatccaaataaccaataaaatggctagcatataa 3964730  T
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    ||||||||| || |||||||  |||||||| |||||    
3964729 atcaaacttccatcatgaaccgtaactctttattta 3964694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 1520383 - 1520517
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| | | || |||||||||||||| | ||  || | |||| |||| |||||||||||||||||||||||||||||||||| ||    
1520383 ttaatatatttagaacaaccgtcatcgaattcgattgataggagtcttaaggtaaaaggaatctaaggttcaaataaccaataaaatacctaacattaaa 1520482  T
200 atcaaacttacaacatgaactataactcttcattt 234  Q
    ||| |||||| ||||| ||||||||||||| ||||    
1520483 atcgaacttataacataaactataactctttattt 1520517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 48572671 - 48572806
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| | | || |||| ||||||||| ||||||||  |||||| |||||||||||||||||||||||||||||  || |||| ||    
48572671 ttaatatatttagaacaaccggcatcaaattagattgataggaatcagaagacaaaaaaaatttaaggttcaaataaccaataaaatagttagcattaaa 48572770  T
200 atcaaacttacaacatgaactataactcttcattta 235  Q
    ||  ||||| ||||||||||||  |||| |||||||    
48572771 attgaacttgcaacatgaactacgactcctcattta 48572806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 41397661 - 41397792
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaa----ggttcaaataaccaataaaatacctaacat 195  Q
    ||||||||||||| ||||| ||| || |||| ||||||||| |||| ||| |||||||||||||||    ||||||  |||||||||||||| ||| |||    
41397661 ttaatatatttagaacaaccgacatcgaattagattgataggaatctgaaggcaaaaagaatttaagtatggttcatgtaaccaataaaatagctagcat 41397760  T
196 tgaaatcaaacttacaacatgaactataactc 227  Q
    ||||||| ||||| ||||||||| ||| ||||    
41397761 tgaaatcgaactttcaacatgaattatgactc 41397792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 30879421 - 30879542
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| |  |||| ||||||||  |||  ||| ||||||||||||||||||| ||||||||||| ||||| ||| |||||||    
30879421 ttaatatatttagaacaaccgactttaaattagattgataacaatttgaaggcaaaaagaatttaaggtttaaataaccaat-aaatagctagcattgaa 30879519  T
200 atcaaacttacaacatgaactat 222  Q
    ||| ||||| |||||| ||||||    
30879520 atcgaacttgcaacataaactat 30879542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 22112196 - 22112330
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| || |||| |||| |||  ||||  || | ||||||||||||||||||||||||| ||||| |||  ||| ||| ||    
22112196 ttaatatatttagaacaaccgacatcgaattagattaatatgaatctaaaggtaaaaagaatttaaggttcaaataacaaataatataattaaaattaaa 22112295  T
200 atcaaacttacaacatgaactataactcttcattt 234  Q
    ||| ||||| ||| |||| | || |||| ||||||    
22112296 atcgaacttgcaaaatgatccatgactcatcattt 22112330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 40494255 - 40494121
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||| ||| || |||| |||| |||  ||||  || | ||||||||||||||||||||||||| ||||| |||  ||| ||| ||    
40494255 ttaatatatttagaacaaccgacatcgaattagattaatatgaatctaaaggtaaaaagaatttaaggttcaaataacaaataatataattaaaattaaa 40494156  T
200 atcaaacttacaacatgaactataactcttcattt 234  Q
    ||| ||||| ||| |||| | || |||| ||||||    
40494155 atcgaacttgcaaaatgatccatgactcatcattt 40494121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 22130467 - 22130597
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaa---agaatttaaggttcaaataaccaataaaatacctaacatt 196  Q
    |||||||||||   ||||| ||| || |||| ||||||||| |||| ||| ||||||   | |||| ||||||||||||| |||||| ||| |||  |||    
22130467 ttaatatatttcaaacaaccgacatcgaattagattgataggaatctgaatgcaaaacaaaaaattaaaggttcaaataatcaataatatagctagaatt 22130566  T
197 gaaatcaaacttacaacatgaactataactc 227  Q
    |||||| ||||| ||||||||| ||| ||||    
22130567 gaaatcgaacttgcaacatgaagtatgactc 22130597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 40500639 - 40500509
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaa---agaatttaaggttcaaataaccaataaaatacctaacatt 196  Q
    |||||||||||   ||||| ||| || |||| ||||||||| |||| ||| ||||||   | |||| ||||||||||||| |||||| ||| |||  |||    
40500639 ttaatatatttcaaacaaccgacatcgaattagattgataggaatctgaatgcaaaacaaaaaattaaaggttcaaataatcaataatatagctagaatt 40500540  T
197 gaaatcaaacttacaacatgaactataactc 227  Q
    |||||| ||||| ||||||||| ||| ||||    
40500539 gaaatcgaacttgcaacatgaagtatgactc 40500509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 14389867 - 14389768
Alignment:
100 ttaatatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaa 199  Q
    ||||||||||||| ||||  ||| |  |||||||||||||| |||||||| ||||||| |||||||| | |||||||||||||||||||||| |||||||    
14389867 ttaatatatttagaacaatcgacattgaattcgattgataggaatcagaaggcaaaaataatttaagatacaaataaccaataaaatacctagcattgaa 14389768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 35549710 - 35549794
Alignment:
127 aattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatcaaacttaca 211  Q
    ||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||  || |||| ||||| ||||||||    
35549710 aattccattgataggaatctgaaggcaaaaagaatttaaggttcaaataaccaataaaataggtagcattaaaatcgaacttaca 35549794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 5813399 - 5813523
Alignment:
103 atatatttagtacaactgacgtctaattcgattgatagaaatcagaaagcaaaaagaatttaaggttcaaataaccaataaaatacctaacattgaaatc 202  Q
    |||||||||| ||||  ||| || |||| ||||||||| |||  ||  | |||||||||||||| ||||||||||||||||||||  || |||| ||||     
5813399 atatatttagaacaatggacttcgaattagattgataggaatttgagggaaaaaagaatttaagattcaaataaccaataaaatagatagcattaaaatt 5813498  T
203 aaacttacaacatgaactataactc 227  Q
     ||||| |||||| |||||||||||    
5813499 gaacttgcaacataaactataactc 5813523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2363 times since January 2019
Visitors: 6162