View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_high_15 (Length: 396)
Name: NF0852_high_15
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 28 - 388
Target Start/End: Original strand, 50531955 - 50532316
Alignment:
| Q |
28 |
caccgaagccagaatccctccacgacgacgataaacaaagccaaaaggaag---------aagaagaagataatgatgatgatattgatatgaacaaaga |
118 |
Q |
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| T |
50531955 |
caccgaagccagaatctctccacgacgacgataaacaaagccaaaaggaagaagaagaagaagaagaagataatgatgatgatattgatatgaacaaaga |
50532054 |
T |
|
| Q |
119 |
aacaggtgaggtcggtgggcctaaagggcctgagcccactaggtatggcgattgggaacgcaatggtcgctgctctgatttttgatttattgcttactac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50532055 |
aacaggtgaggtcggtgggcctaaagggcctgagcccactaggtatggcgattgggaacgcaatggtcgctgctctgatttttgatttattgcttactac |
50532154 |
T |
|
| Q |
219 |
tttacaataaccaataccatagcataataaagttgtaagtcataaattgtgtacgtatttctcattcaaatttttaagaatcactgcgttttctcttggt |
318 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50532155 |
tttacaataaccaataccataacataataaagttgtaagtcataaattgtgtacgtatttctcattcaaatttttaagaatcactgcgtattctcttggt |
50532254 |
T |
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| Q |
319 |
tctttattgcttatatgcttatatgtatgaaactgaggttgggtgaagttgaacagatcaaccctatgat |
388 |
Q |
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| T |
50532255 |
tctttat--------tgcttatatgtatgaaactgaggttgggtgaagttgaacagatcaaccctatgat |
50532316 |
T |
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