View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_high_22 (Length: 322)
Name: NF0852_high_22
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 12322730 - 12322458
Alignment:
| Q |
1 |
gtaatgtgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgcagaatcttcttatagctgcatgtgaaaatattgcctaagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12322730 |
gtaatgtgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgcagaatcttcttatagctgcatgtgaaaatattgcctaagaat |
12322631 |
T |
|
| Q |
101 |
tgaaactatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttatagcttataatcacaaacacttttgtcacctcagaacacnnnn |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12322630 |
tgaaactatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttatagcttataatcacaaacacttttgtcacctcagaacacaaaa |
12322531 |
T |
|
| Q |
201 |
nnngtgcactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttctttctctgttctttc |
273 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12322530 |
aaagtgcactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttctttctctgttctttc |
12322458 |
T |
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