View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0852_high_27 (Length: 251)
Name: NF0852_high_27
Description: NF0852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0852_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 26584327 - 26584255
Alignment:
| Q |
126 |
tgtggtatgagttgtaaggatatggtgggggagacattataactaacaaatctgataaatgtcaagatcaatc |
198 |
Q |
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| T |
26584327 |
tgtggtatgagttgtaaggatatggtgggggagacattataactaacaaatctgataaatgtcaagatcaatc |
26584255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 26584442 - 26584389
Alignment:
| Q |
11 |
cagagaaaatgtcgatgtccctcgtgtgatgtataataaagatacaatgaacca |
64 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26584442 |
cagagaaaatgtcaatgtccctcgtgtgatgtataataaagatacaatgaacca |
26584389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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